Results 231 to 240 of about 1,311,103 (281)
A weighted two-stage sequence alignment framework to identify motifs from ChIP-exo data. [PDF]
Patterns (N Y)Li Y, Wang Y, Wang C, Ma A, Ma Q, Liu B.
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Multiple sequence alignment-based RNA language model and its application to structural inference. [PDF]
Nucleic Acids ResZhang Y +13 more
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Linear Sequence-to-Sequence Alignment
IEEE Transactions on Pattern Analysis and Machine Intelligence, 2004In this paper, we consider the problem of estimating the spatiotemporal alignment between N unsynchronized video sequences of the same dynamic 3D scene, captured from distinct viewpoints. Unlike most existing methods, which work for N = 2 and rely on a computationally intensive search in the space of temporal alignments, we present a novel approach ...
Rodrigo L. Carceroni +3 more
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Aligning a DNA sequence with a protein sequence
Proceedings of the first annual international conference on Computational molecular biology - RECOMB '97, 1997We develop several algorithms for the problem of aligning DNA sequence with a protein sequence. Our methods account for frameshift errors, but not for introns in the DNA sequence. Thus, they are particularly appropriate for comparing a cDNA sequence that suffers from sequencing errors with an amino acid sequence or a protein sequence database.
Zheng Zhang 0004 +2 more
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2016
The increasing importance of Next Generation Sequencing (NGS) techniques has highlighted the key role of multiple sequence alignment (MSA) in comparative structure and function analysis of biological sequences. MSA often leads to fundamental biological insight into sequence-structure-function relationships of nucleotide or protein sequence families ...
Bawono, Punto +5 more
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The increasing importance of Next Generation Sequencing (NGS) techniques has highlighted the key role of multiple sequence alignment (MSA) in comparative structure and function analysis of biological sequences. MSA often leads to fundamental biological insight into sequence-structure-function relationships of nucleotide or protein sequence families ...
Bawono, Punto +5 more
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2016 IEEE International Conferences on Big Data and Cloud Computing (BDCloud), Social Computing and Networking (SocialCom), Sustainable Computing and Communications (SustainCom) (BDCloud-SocialCom-SustainCom), 2016
Sequence alignment has been used to align DNA sequences to find matching segments of DNA from different specimens. Just as DNA sequences can be used to find similar patterns in DNA, this process can also be used on computer programs to identify when segments of code have been reused.
Andrew Dinh +3 more
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Sequence alignment has been used to align DNA sequences to find matching segments of DNA from different specimens. Just as DNA sequences can be used to find similar patterns in DNA, this process can also be used on computer programs to identify when segments of code have been reused.
Andrew Dinh +3 more
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2008
Multiple sequence alignment (MSA) has assumed a key role in comparative structure and function analysis of biological sequences. It often leads to fundamental biological insight into sequence-structure-function relationships of nucleotide or protein sequence families.
Pirovano, W., Heringa, J.
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Multiple sequence alignment (MSA) has assumed a key role in comparative structure and function analysis of biological sequences. It often leads to fundamental biological insight into sequence-structure-function relationships of nucleotide or protein sequence families.
Pirovano, W., Heringa, J.
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Current Opinion in Structural Biology, 2006
Multiple sequence alignments are an essential tool for protein structure and function prediction, phylogeny inference and other common tasks in sequence analysis. Recently developed systems have advanced the state of the art with respect to accuracy, ability to scale to thousands of proteins and flexibility in comparing proteins that do not share the ...
Robert C, Edgar, Serafim, Batzoglou
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Multiple sequence alignments are an essential tool for protein structure and function prediction, phylogeny inference and other common tasks in sequence analysis. Recently developed systems have advanced the state of the art with respect to accuracy, ability to scale to thousands of proteins and flexibility in comparing proteins that do not share the ...
Robert C, Edgar, Serafim, Batzoglou
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Journal of Molecular Biology, 1986
A method has been developed for aligning segments of several sequences at once. The number of search steps depends only polynomially on the number of sequences, instead of exponentially, because most alignments are rejected without being evaluated explicitly. A data structure herein called the "heap" facilitates this process.
D J, Bacon, W F, Anderson
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A method has been developed for aligning segments of several sequences at once. The number of search steps depends only polynomially on the number of sequences, instead of exponentially, because most alignments are rejected without being evaluated explicitly. A data structure herein called the "heap" facilitates this process.
D J, Bacon, W F, Anderson
openaire +2 more sources