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Sequence Analysis

2022
The collection and understanding of biological sequences once founded bioinformatics as a scientific field, and is still the most common reception even outside the scientific community. In this chapter we introduce principles of sequence analysis, starting on the biological backgrounds, up to algorithmic concerns.
Dörpinghaus, Jens   +3 more
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Sequence analysis of proteins

Gene Analysis Techniques, 1987
There has been a rapid increase in the number of available protein sequences derived from gene-sequence information. Computer-based sequence analysis of proteins is gaining in importance as an analytical tool. With the help of these analyses such sequences may be characterized and some insights gained into their probable role in the system.
Jacob V. Maizel, Devjani Chatterjee
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DNA Sequence Analysis and Comparative Sequencing

Methods, 1998
Abstract This article aims to give an introduction to comparative sequencing and analysis, containing a brief section on sequence production, but focusing on the computer-based ( in silico ) analysis of genomic sequence.
Ann-Marie Mallon, Mark A. Strivens
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Basic Protein Sequence Analysis [PDF]

open access: possibleCurrent Protocols in Molecular Biology, 2005
AbstractPrediction of molecular function of proteins has become an important task in the genomics era. A wide variety of sequence analysis tools are available to biologists for this task. We have selected one or two primary protocols for tasks such as domain detection, subcellular localization, and motif detection.
Nandini Krishnamurthy, Kimmen Sjölander
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Sequence Analysis on Microcomputers

Science, 1987
Overall, each of the program packages performed their tasks satisfactorily. For analyses where there was a well-defined answer, such as a search for a restriction site, there were few significant differences between the program sets. However, for tasks in which a degree of flexibility is desirable, such as homology or similarity determinations and ...
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