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A Unified String Kernel for Biology Sequence

2008
In this paper, we introduce a unified String Kernel. Based on this unified string kernel, we construct improved sparse kernel and composite kernel. Using the same target families and the same test and training set splits as in the protein classification experiments from Weston, we do experiments with these new kernels. The results show that our kernels
Guoming Lai, Shengyun Yang, Dehui Yuan
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Sequencing breakthroughs for genomic ecology and evolutionary biology

Molecular Ecology Resources, 2008
AbstractTechniques involving whole‐genome sequencing and whole‐population sequencing (metagenomics) are beginning to revolutionize the study of ecology and evolution. This revolution is furthest advanced in the Bacteria and Archaea, and more sequence data are required for genomic ecology to be fully applied to the majority of eukaryotes.
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Supercomputing in molecular biology: applications to sequence analysis

IEEE Engineering in Medicine and Biology Magazine, 1988
Genetic data, accumulating at a rapid pace, are ideally suited to computer analysis. These data pose problems of a magnitude that requires supercomputing. The National Cancer Institute of the US National Institutes of Health (NIH) has developed the Advanced Scientific Computing Laboratory to utilize these data for basic research of relevance to cancer ...
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Self-destruct sequences

Nature Methods, 2013
High-throughput sequencing of massive mutant libraries helps researchers catalog determinants of protein stability.
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Yeast Genome Sequencing: Basic Biology, Human Biology, and Biotechnology

2017
Whole-genome sequencing of Saccharomyces cerevisiae is one of the milestones of genome research which complemented the understanding in basic biology and expanded the field of yeast biotechnology. It was the first fungus as well as first eukaryote used for reverse genetic experiments, which created consensus among research community to sequence the ...
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Computer Applications to Molecular Biology: DNA Sequences

2003
Computers have become a necessary tool in all laboratories involved in DNA sequence work. There has been a rapid increase in the amount of DNA sequenced, and the most recent issue of the European Molecular Biology Laboratory (EMBL) Nucleotide Sequence Data Library (release 10, 1987) contains almost 10 million base pairs in almost 9000 entries compared ...
Petter Gustafsson, Robert Harr
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Matching and comparing sequences in molecular biology

1995
The primary structure of a deoxyribonucleic acid (DNA) molecule is a sequence consisting of four types of letters, A, C., G, and T, each stands for a nucleotide. The length of such a DNA sequence ranges from several thousand letters for a simple virus to three billion letters for a human. We all know that these long and mysterious sequences encode Life
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