Results 21 to 30 of about 8,102,704 (303)
A simple method for global sequence comparison
Nucleic Acids Research, 1992 A simple method of sequence comparison, based on a correlation analysis of oligonucleotide frequency distributions, is here shown to be a reliable test of overall sequence similarity. The method does not involve sequence alignment procedures and permits the rapid screening of large amounts of sequence data.
PIZZI E +4 more
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Frontiers in Allergy, 2022 Celiac disease (CeD) is an autoimmune enteropathy induced by prolamin and glutelin proteins in wheat, barley, rye, and triticale recognized by genetically restricted major histocompatibility (MHC) receptors.
Plaimein Amnuaycheewa +7 more
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q-gram analysis and urn models [PDF]
Discrete Mathematics & Theoretical Computer Science, 2003 Words of fixed size q are commonly referred to as $q$-grams. We consider the problem of $q$-gram filtration, a method commonly used to speed upsequence comparison. We are interested in the statistics of the number of $q$-grams common to two random texts (
Pierre Nicodème
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Pairwise Heuristic Sequence Alignment Algorithm Based on Deep Reinforcement Learning
IEEE Open Journal of Engineering in Medicine and Biology, 2021 Goal: Various methods have been developed to analyze the association between organisms and their genomic sequences. Among them, sequence alignment is the most frequently used method for comparative analysis of biological genomes.
Yong-Joon Song +4 more
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Toward Efficient Similarity Search under Edit Distance on Hybrid Architectures
Information, 2022 Edit distance is the most widely used method to quantify similarity between two strings. We investigate the problem of similarity search under edit distance.
Madiha Khalid +2 more
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Secure outsourcing of sequence comparisons [PDF]
International Journal of Information Security, 2005 Large-scale problems in the physical and life sciences are being revolutionized by Internet computing technologies, like grid computing, that make possible the massive cooperative sharing of computational power, bandwidth, storage, and data. A weak computational device, once connected to such a grid, is no longer limited by its slow speed, small ...
Mikhail J. Atallah, Jiangtao Li 0001
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Pathogens, 2023 A novel Babesia sp. infecting goats was discovered based on the molecular findings obtained in the current study, which was conducted in the Mediterranean region of Türkiye.
Sezayi Ozubek +2 more
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Local Alignment of DNA Sequence Based on Deep Reinforcement Learning
IEEE Open Journal of Engineering in Medicine and Biology, 2021 Goal: Over the decades, there have been improvements in the sequence alignment algorithm, with significant advances in various aspects such as complexity and accuracy. However, human-defined algorithms have an explicit limitation in view of developmental
Yong-Joon Song, Dong-Ho Cho
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Frontiers in Allergy, 2021 Motivation: The availability of databases identifying allergenic proteins via a transparent and consensus-based scientific approach is of prime importance to support the safety review of genetically-modified foods and feeds, and public safety in general.
Ronald van Ree +24 more
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Biomedical and Biotechnology Research Journal, 2023 Background: Bruguiera hainesii C.G. Rogers 1919, a true mangrove tree is a critically endangered species (CR) in Vietnam. This species is restricted to the Con Dao National Park, Ba Ria-Vung Tau province, where it occurs in very tiny populations. However,
Viet Ha Tran +5 more
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