Results 31 to 40 of about 8,102,704 (303)
Information Theory in Computational Biology: Where We Stand Today
Entropy, 2020 “A Mathematical Theory of Communication” was published in 1948 by Claude Shannon to address the problems in the field of data compression and communication over (noisy) communication channels.
Pritam Chanda +5 more
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Kmer-based sequence representations for fast retrieval and comparison [PDF]
, 2017 This thesis presents a study of alignment-free methods for genetic sequence comparison. By using representations based on k-mers – short subsequences of length k - sequence similarity can be measured rapidly and accurately by calculating the distance ...
Wu, Zutao
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AGenDA: gene prediction by cross-species sequence comparison [PDF]
, 2004 Taher L, Rinner O, Garg S, Sczyrba A, Morgenstern B. AGenDA: gene prediction by cross-species sequence comparison. Nucleic Acids Research. 2004;32(Web Server):W305-W308.Automatic gene prediction is one of the major challenges in computational sequence ...
Sczyrba, Alexander ; https://orcid.org/ +9 more
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Genomic of the severe isolate of Maize chlorotic dwarf virus
Plant Protection Science, 2004 The complete sequences of the severe isolates of Maize chlorotic dwarf virus (MCDV-S) were obtained from cDNA clones of the viral RNA. The genome is 11 785 nucleotides (nt) in length and contains one large open reading frame between nt 455 and 10 825 ...
Rym Chaouch +3 more
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Statistical Properties of Similarity Score Functions [PDF]
Discrete Mathematics & Theoretical Computer Science, 2006 In computational biology, a large amount of problems, such as pattern discovery, deals with the comparison of several sequences (of nucleotides, proteins or genes for instance).
Jérémie Bourdon, Alban Mancheron
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Comparison of DNA Sequences with Protein Sequences
Genomics, 1997 The FASTA package of sequence comparison programs has been expanded to include FASTX and FASTY, which compare a DNA sequence to a protein sequence database, translating the DNA sequence in three frames and aligning the translated DNA sequence to each sequence in the protein database, allowing gaps and frameshifts.
W R, Pearson +3 more
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A new approach to sequence comparison: normalized sequence alignment [PDF]
Bioinformatics, 2001 Abstract The Smith–Waterman algorithm for local sequence alignment is one of the most important techniques in computational molecular biology. This ingenious dynamic programming approach was designed to reveal the highly conserved fragments by discarding poorly conserved initial and terminal segments.
Abdullah N. Arslan +2 more
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Journal of Infection in Developing Countries, 2011 Introduction: Influenza A viruses possess a unique genomic structure which leads to genetic instability, especially in products of neuraminidase and hemagglutinin genes.
Azeem Mehmood Butt +7 more
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BMC Microbiology, 2021 Background Acquisition of IncI1 plasmids by members of the Enterobacteriaceae sometimes leads to transfer of antimicrobial resistance and colicinogeny as well as change of phage type in Salmonella Typhimurium. Isolates of S.
Lester Hiley +2 more
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Strong and A-statistical comparisons for sequences
Journal of Mathematical Analysis and Applications, 2003 Let \(B=(b_{nk})\) be a non-negative regular matrix and \(K \subseteq N=\{1,2, \dots\}\). If there exists \[ \delta_B(K)= \lim_{n\to \infty} \sum^\infty_{k=1} b_{nk}\chi(k) \] \(\chi\) being the characteristic function of \(K\), then \(\delta_B(K)\) is said to be the \(B\)-density of \(K\).
Demirci, Kamil +2 more
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