Results 11 to 20 of about 2,878,272 (172)

Modeling Sequence-Space Exploration and Emergence of Epistatic Signals in Protein Evolution. [PDF]

Mol Biol Evol, 2022
Bisardi M, Rodriguez-Rivas J, Zamponi F, Weigt M.   +3 more
europepmc   +2 more sources

AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models. [PDF]

Nucleic Acids Res, 2022
Varadi M, Anyango S, Deshpande M, Nair S, Natassia C, Yordanova G, Yuan D, Stroe O, Wood G, Laydon A, Žídek A, Green T, Tunyasuvunakool K, Petersen S, Jumper J, Clancy E, Green R, Vora A, Lutfi M, Figurnov M, Cowie A, Hobbs N, Kohli P, Kleywegt G, Birney E, Hassabis D, Velankar S.   +26 more
europepmc   +2 more sources

Multistate and functional protein design using RoseTTAFold sequence space diffusion. [PDF]

Nat Biotechnol
Lisanza SL, Gershon JM, Tipps SWK, Sims JN, Arnoldt L, Hendel SJ, Simma MK, Liu G, Yase M, Wu H, Tharp CD, Li X, Kang A, Brackenbrough E, Bera AK, Gerben S, Wittmann BJ, McShan AC, Baker D.   +18 more
europepmc   +2 more sources

Scalable protein design using optimization in a relaxed sequence space. [PDF]

Science
Frank C, Khoshouei A, Fuβ L, Schiwietz D, Putz D, Weber L, Zhao Z, Hattori M, Feng S, de Stigter Y, Ovchinnikov S, Dietz H.   +11 more
europepmc   +2 more sources

Solvability of an infinite system of integral equations on the real half-axis

Advances in Nonlinear Analysis, 2020
The aim of the paper is to investigate the solvability of an infinite system of nonlinear integral equations on the real half-axis. The considerations will be located in the space of function sequences which are bounded at every point of the half-axis ...
Banaś Józef, Woś Weronika
doaj   +1 more source

Reduced space sequence alignment [PDF]

Bioinformatics, 1997
Sequence alignment is the problem of finding the optimal character-by-character correspondence between two sequences. It can be readily solved in O(n2) time and O(n2) space on a serial machine, or in O(n) time with O(n) space per O(n) processing elements on a parallel machine.
J A, Grice, R, Hughey, D, Speck
openaire   +2 more sources

Binomial difference sequence spaces of order m

Advances in Difference Equations, 2017
In this paper, we introduce the binomial sequence spaces b 0 r , s ( ∇ ( m ) ) $b^{r,s}_{0}(\nabla^{(m)})$ , b c r , s ( ∇ ( m ) ) $b^{r,s}_{c}(\nabla^{(m)})$ and b ∞ r , s ( ∇ ( m ) ) $b^{r,s}_{\infty}(\nabla^{(m)})$ by combining the binomial ...
Jian Meng, Meimei Song
doaj   +1 more source

Intermolecular epistasis shaped the function and evolution of an ancient transcription factor and its DNA binding sites

eLife, 2015
Complexes of specifically interacting molecules, such as transcription factor proteins (TFs) and the DNA response elements (REs) they recognize, control most biological processes, but little is known concerning the functional and evolutionary effects of ...
Dave W Anderson, Alesia N McKeown, Joseph W Thornton   +2 more
doaj   +1 more source

Fuzzy Entire Sequence Spaces [PDF]

International Journal of Mathematics and Mathematical Sciences, 2007
We first investigate the notion of fuzzy entire sequence space with a suitable example. Also we deal with the properties of the space of fuzzy entire sequences. The concepts of subset and superset of the fuzzy entire sequence spaces are introduced and their properties are discussed.
J. Kavikumar, Azme Bin Khamis, R. Kandasamy   +2 more
openaire   +2 more sources

Almost Entropy Convergence for Fuzzy Sequence Spaces

Sakarya Üniversitesi Fen Bilimleri Enstitüsü Dergisi, 2018
In this paper, weintroduce a new type convergence called almost entropy convergence forsequences of fuzzy numbers. In addition this, we show that almost entropyconvergence can be defined as the intersection of convergence field of Cesàro matrix.
Zarife Zararsız
doaj   +1 more source