Results 191 to 200 of about 1,719,091 (311)

Using sets of orthologous genes to discover regulatory sites in DNA sequences [PDF]

, 2011
De Witte, Dieter
core  

Circulating tumor cell viability during and after radiotherapy mirrors treatment response in cancer patients

Molecular Oncology, EarlyView.
Radiotherapy (RT) response depends on the DNA repair capacity of tumor and host cells. We show that circulating tumor cell (CTC) counts and apoptosis rates before and after RT predict treatment response and outcome, which can be accessed via easily accessible liquid biopsy approaches. Created in BioRender. Wikman, H.
Yvonne Goy, Jana Löptien, Cornelia Coith, Afroditi Nanou, Katharina Hintelmann, Pinnschmidt Hans, Cordula Petersen, Klaus Pantel, Sabine Riethdorf, Kerstin Borgmann, Harriet Wikman   +10 more
wiley   +1 more source

Deep learning for RNA secondary structure determination: gauging generalizability and broadening the scope of traditional methods. [PDF]

RNA
Szikszai M, Wang TY, Krueger R, Mathews DH, Ward M, Aviran S.   +5 more
europepmc   +1 more source

Clinical performance of the urine‐based TERT promoter AbsoluteQ Digital PCR for non‐invasive detection of bladder cancer

Molecular Oncology, EarlyView.
A urine‐based digital PCR assay targeting two hotspot TERT promoter variants detected bladder cancer with high sensitivity and no false positives in this case–control cohort. The streamlined AbsoluteQ workflow outperformed Sanger sequencing and supports non‐invasive molecular testing for bladder cancer detection.
Anna Nykel, Izabela Kubiak, Lena Rutkowska, Żaneta Kasprzyk, Łukasz Kępczyński, Michał Bednarek, Dariusz Sobieraj, Jacek Wilkosz, Piotr Kania, Adam Jędrzejczyk, Bogdan Kałużewski, Agnieszka Gach, Tadeusz Kałużewski   +12 more
wiley   +1 more source

Designing genetically stable multicopy gene constructs with the ChimeraUGEM web server. [PDF]

NAR Genom Bioinform
Burghardt M, Diament A, Tuller T.
europepmc   +1 more source

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

, 2013
J. Bengtsson-Palme, Martin Ryberg, M. Hartmann, S. Branco, Z. Wang, Anna Godhe, P. Wit, M. Sánchez-García, I. Ebersberger, F. Sousa, A. Amend, A. Jumpponen, M. Unterseher, E. Kristiansson, K. Abarenkov, Y. Bertrand, Kemal Sanli, K. M. Eriksson, Unni Vik, Vilmar Veldre, R. Nilsson   +20 more
semanticscholar   +1 more source

Loss of IGF‐1R impairs DNA‐PKcs recruitment to chromatin leading to defective end‐joining

Molecular Oncology, EarlyView.
IGF‐1R promotes radioresistance by facilitating DNA‐PKcs recruitment to chromatin, enabling non‐homologous end‐joining (NHEJ) repair of double‐strand breaks. Inhibition or loss of IGF‐1R disrupts this recruitment to damage sites, driving compensatory reliance on microhomology‐mediated end‐joining (MMEJ) repair.
Matthew O. Ellis, Jack V. Mills, Wojciech Niedzwiedz, Valentine M. Macaulay   +3 more
wiley   +1 more source

LiBRe: A Ligand-Aware Sequence-Based Binding Residue Prediction Model for Virtual Screening. [PDF]

J Chem Inf Model
Kang K, Kim M, Kim J, Sel S, Song G.
europepmc   +1 more source

Automated FRAP microscopy for high‐throughput analysis of protein dynamics in chromatin organization and transcription

FEBS Open Bio, EarlyView.
RoboMic is an automated confocal microscopy pipeline for high‐throughput functional imaging in living cells. Demonstrated with fluorescence recovery after photobleaching (FRAP), it integrates AI‐driven nuclear segmentation, ROI selection, bleaching, and analysis.
Selçuk Yavuz, Bart Geverts, Johan A. Slotman, Andrea Sacchetti, Stefan Prekovic, Martin E. van Royen, Adriaan B. Houtsmuller   +6 more
wiley   +1 more source

Protocol update to: Protocol to generate dual-target compounds using a transformer-based chemical language model. [PDF]

STAR Protoc
Srinivasan S, Bajorath J.
europepmc   +1 more source