Results 31 to 40 of about 144,200 (356)

Salmonella Serotyping; Comparison of the Traditional Method to a Microarray-Based Method and an in silico Platform Using Whole Genome Sequencing Data

Frontiers in Microbiology, 2019
Salmonella is one of the most common causes of food-borne diseases worldwide. While Salmonella molecular subtyping by Whole Genome Sequencing (WGS) is increasingly used for outbreak and source tracking investigations, serotyping remains as a first-line ...
Benjamin Diep, C. Barretto, Anne-Catherine Portmann, Coralie Fournier, A. Karczmarek, G. Voets, Shaoting Li, Xiangyu Deng, A. Klijn   +8 more
semanticscholar   +1 more source

Serotypes, Pathotypes, Shiga Toxin Variants and Antimicrobial Resistance in Diarrheagenic Escherichia coli Isolated from Rectal Swabs and Sheep Carcasses in an Abattoir in Mexico

Agriculture, 2023
Sheep represent one of the main reservoirs of diarrheagenic Escherichia coli; this microorganism is an etiological agent of food-borne diseases; therefore, this work aimed to identify and characterize the principal pathotypes of diarrheagenic E.
Edgar Enriquez-Gómez, Jorge Acosta-Dibarrat, Martín Talavera-Rojas, Edgardo Soriano-Vargas, Armando Navarro, Rosario Morales-Espinosa, Valente Velázquez-Ordoñez, Luis Cal-Pereyra   +7 more
doaj   +1 more source

SeroBA: rapid high-throughput serotyping of Streptococcus pneumoniae from whole genome sequence data

bioRxiv, 2017
Streptococcus pneumoniae is responsible for 240,000 - 460,000 deaths in children under 5 years of age each year. Accurate identification of pneumococcal serotypes is important for tracking the distribution and evolution of serotypes following the ...
Lennard Epping, Andries J. van Tonder, R. Gladstone, S. Bentley, A. Page, Jacqueline A. Keane   +5 more
semanticscholar   +1 more source

Yersinia ruckeri isolates recovered from diseased Atlantic Salmon (Salmo salar) in Scotland are more diverse than those from Rainbow Trout (Oncorhynchus mykiss) and represent distinct subpopulations [PDF]

, 2016
Yersinia ruckeri is the etiological agent of enteric redmouth (ERM) disease of farmed salmonids. Enteric redmouth disease is traditionally associated with rainbow trout (Oncorhynchus mykiss, Walbaum), but its incidence in Atlantic salmon (Salmo salar) is
Burchmore, Richard, Caws, Thomas, Davies, Robert L., Ormsby, Michael J., Verner-Jeffreys, David W., Wallis, Tim   +5 more
core   +1 more source

Characterization of non-typhoidal Salmonella enterica strains of human origin in central and southern Italy

Italian Journal of Food Safety, 2018
Non-typhoidal Salmonella enterica infection is a significant public health problem worldwide. The aim of this study was to characterize Salmonella enterica strains isolated from human specimens in central and southern Italy, for epidemiological studies ...
Yolande T.R. Proroga, Federico Capuano, Rosanna Capparelli, Stefano Bilei, Mariano Bernardo, Maria Pia Cocco, Rosalba Campagnuolo, Vincenzo Pasquale   +7 more
doaj   +1 more source

In Silico Serotyping Based on Whole-Genome Sequencing Improves the Accuracy of Shigella Identification

Applied and Environmental Microbiology, 2019
Shigella causes diarrheal disease with serious public health implications. However, conventional Shigella identification methods are laborious and time-consuming and can be erroneous due to the high similarity between Shigella and enteroinvasive ...
Yun Wu, H. K. Lau, Teresa Lee, David K. Lau, Justin Payne   +4 more
semanticscholar   +1 more source

Genetic, serological and biochemical characterization of Leishmania tropica from foci in northern Palestine and discovery of zymodeme MON-307 [PDF]

, 2012
Background Many cases of cutaneous leishmaniasis (CL) have been recorded in the Jenin District based on their clinical appearance. Here, their parasites have been characterized in depth.
A Al-Jawabreh, A Al-Jawabreh, A Al-Jawabreh, A Warburg, Abedelmajeed Nasereddin, Christophe Ravel, CL Eisenberger, CL Jaffe, DE Dobson, DF Smith, E Cupolillo, EK Saliba, EK Saliba, F Pratlong, Fouad El Baidouri, Francine Pratlong, G Anders, G Schonian, G Schonian, Gabriele Schonian, IL Mauricio, J Felsenstein, JA Rioux, JA Rioux, Jean-Pierre Dedet, JM Schwenkenbecher, K Azmi, K Azmi, Kifaya Azmi, LF Schnur, LF Schnur, LF Schnur, LF Schnur, Lionel Schnur, M Rhajaoui, M Svobodova, MZ Alam, R Maazoun, RL Jacobson, RP Soares, S Adler, S Kamhawi, S Martinez-Calvillo, SM Le Blancq, SM Le Blancq, Suheir Ereqat, Y Schlein, Y Schlein, Ziad Abdeen   +48 more
core   +3 more sources

Serotyping, Genotyping and Virulence Genes Characterization of Pasteurella multocida and Mannheimia haemolytica Isolates Recovered from Pneumonic Cattle Calves in North Upper Egypt

Veterinary Sciences, 2020
Pasteurella (P.) multocida and Mannheimia (M.) haemolytica are the most two common pathogenic bacterial agents causing pneumonia in calves. Both bacteria are associated with significant economic losses in the cattle industry due to high morbidity and ...
Ahmed H. Abed, Fawzy R. El-Seedy, Hany M. Hassan, Ashraf M. Nabih, Eman Khalifa, Salwa E. Salem, Gamal Wareth, Ahmed M. S. Menshawy   +7 more
doaj   +1 more source

Salmonella Serotyping Using Whole Genome Sequencing

Frontiers in Microbiology, 2018
Until recently, traditional serology and the Kauffmann White Scheme (KWS) have been the gold standard for Salmonella serotyping. Whole Genome Sequencing (WGS) has now emerged as an alternative in this field.
G. Ibrahim, P. Morin
semanticscholar   +1 more source

Variation at the capsule locus, cps, of mistyped and non-typable Streptococcus pneumoniae isolates [PDF]

, 2012
The capsule polysaccharide locus (cps) is the site of the capsule biosynthesis gene cluster in encapsulated Streptococcus pneumoniae. A set of pneumococcal samples and non-pneumococcal streptococci from Denmark, the Gambia, the Netherlands, Thailand, the
Antonio, M, Bentley, SD, Bootsma, HJ, Gould, KA, Hanage, WP, Hermans, PW, Hinds, J, Lambertsen, L, O'Brien, KL, Salter, SJ, Turner, P   +10 more
core   +1 more source