Results 31 to 40 of about 7,799 (146)

Protein Complexes Form a Basis for Complex Hybrid Incompatibility

open access: yesFrontiers in Genetics, 2021
Proteins are the workhorses of the cell and execute many of their functions by interacting with other proteins forming protein complexes. Multi-protein complexes are an admixture of subunits, change their interaction partners, and modulate their ...
Krishna B. S. Swamy   +3 more
doaj   +1 more source

Statistical Physics of Evolutionary Trajectories on Fitness Landscapes [PDF]

open access: yes, 2013
Random walks on multidimensional nonlinear landscapes are of interest in many areas of science and engineering. In particular, properties of adaptive trajectories on fitness landscapes determine population fates and thus play a central role in ...
Manhart, Michael, Morozov, Alexandre V.
core   +1 more source

Promiscuity‐Guided Enzyme Evolution via Substrate Multiplexed Screening

open access: yesAngewandte Chemie, EarlyView.
Through historical context and recent examples, this Minireview summarizes the strengths, limitations, and practical considerations for the implementation of substrate multiplexed screening (SUMS) in enzyme evolution. ABSTRACT An enzyme's ability to react with diverse substrates while maintaining high yield and selectivity, termed “substrate ...
Holly A. Weilbaker   +3 more
wiley   +2 more sources

Widespread Genetic Incompatibilities between First-Step Mutations during Parallel Adaptation of Saccharomyces cerevisiae to a Common Environment.

open access: yesPLoS Biology, 2017
Independently evolving populations may adapt to similar selection pressures via different genetic changes. The interactions between such changes, such as in a hybrid individual, can inform us about what course adaptation may follow and allow us to ...
Jasmine Ono   +2 more
doaj   +1 more source

Red Queen dynamics with non-standard fitness interactions. [PDF]

open access: yesPLoS Computational Biology, 2009
Antagonistic coevolution between hosts and parasites can involve rapid fluctuations of genotype frequencies that are known as Red Queen dynamics. Under such dynamics, recombination in the hosts may be advantageous because genetic shuffling can quickly ...
Jan Engelstädter, Sebastian Bonhoeffer
doaj   +1 more source

An experimental assay of the interactions of amino acids from orthologous sequences shaping a complex fitness landscape.

open access: yesPLoS Genetics, 2019
Characterizing the fitness landscape, a representation of fitness for a large set of genotypes, is key to understanding how genetic information is interpreted to create functional organisms.
Victoria O Pokusaeva   +13 more
doaj   +1 more source

An evolution-based high-fidelity method of epistasis measurement: Theory and application to influenza.

open access: yesPLoS Pathogens, 2021
Linkage effects in a multi-locus population strongly influence its evolution. The models based on the traveling wave approach enable us to predict the average speed of evolution and the statistics of phylogeny.
Gabriele Pedruzzi, Igor M Rouzine
doaj   +1 more source

Effects of Epistasis and Pleiotropy on Fitness Landscapes

open access: yes, 2013
The factors that influence genetic architecture shape the structure of the fitness landscape, and therefore play a large role in the evolutionary dynamics. Here the NK model is used to investigate how epistasis and pleiotropy -- key components of genetic
A Dawid   +15 more
core   +1 more source

Properties of selected mutations and genotypic landscapes under Fisher's Geometric Model

open access: yes, 2014
The fitness landscape - the mapping between genotypes and fitness - determines properties of the process of adaptation. Several small genetic fitness landscapes have recently been built by selecting a handful of beneficial mutations and measuring fitness
Achaz, Guillaume   +3 more
core   +3 more sources

Epistasis and Entropy

open access: yes, 2015
Epistasis is a key concept in the theory of adaptation. Indicators of epistasis are of interest for large system where systematic fitness measurements may not be possible. Some recent approaches depend on information theory.
Crona, Kristina
core   +3 more sources

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