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SimGBS: a rapid method for simulating large-scale genotyping-by-sequencing data. [PDF]

BMC Bioinformatics
Kang J, Hess MK, Dodds KG, Brauning R, McEwan JC, Foote BJ, Foote JF, Konkolewska A, Clarke SM, Hess AS.   +9 more
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SNP-PHAGE: High-Throughput SNP Discovery Pipeline

2009
High-throughput genotyping technologies have become popular in studies that aim to reveal the genetics behind polygenic traits such as complex disease and the diverse response to some drug treatments. These technologies utilize bioinformatics tools to define strategies, analyze data, and estimate the final associations between certain genetic markers ...
Ana M, Aransay, Rune, Matthiesen, Manuela M, Regueiro   +2 more
openaire   +2 more sources

SNP Databases

2009
Researchers interested in obtaining detailed information on SNPs now work in a golden age of online database availability: never has so much data and such a wealth of information been freely accessible for such a substantial proportion of the 18 million single nucleotide polymorphism (SNP) loci currently characterized in the human genome.
openaire   +2 more sources

Tag SNP selection using similarity associations between SNPs

2015 International Symposium on Innovations in Intelligent SysTems and Applications (INISTA), 2015
Genetic changes that may be associated with complex diseases are tried to be determined by means of many genome-wide association studies. Single Nucleotide Polymorphisms (SNPs) are used primarily in these studies since they comprise a large part of these genetic changes. Statistical importance of the genome-wide association study is directly related to
Ilhan, Ilhan, Tezel, Gulay, Ozcan, Cengiz   +2 more
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SNP‐SNP and SNP‐environment interactions of potentially functional HOTAIR SNPs modify the risk of hepatocellular carcinoma

Molecular Carcinogenesis, 2019
HOX transcript antisense intergenic RNA (HOTAIR) has been widely regarded as a functional lncRNA contributing to multiple cancers. However, few studies have examined the effect of single nucleotide polymorphisms (SNPs) in HOTAIR on the occurrence and development of hepatocellular carcinoma (HCC). In this study, three potentially functional HOTAIR SNPs (
Junguo Zhang, Li Liu, Zhifeng Lin, Xiaohui Ji, Lucheng Pi, Xinqi Lin, Nana Tian, Guiyan Liu, Qing Liu, Ziqiang Lin, Sidong Chen, Xinfa Yu, Yanhui Gao   +12 more
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Sampling SNPs

Nature Genetics, 2000
Z, Yang, G K, Wong, M A, Eberle, M, Kibukawa, D A, Passey, W R, Hughes, L, Kruglyak, J, Yu   +7 more
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SNP Genotyping Technologies

2013
In the recent years, single nucleotide polymorphism (SNP) markers have emerged as the marker technology of choice for plant genetics and breeding applications. Besides the efficient technologies available for SNP discovery even in complex genomes, one of the main reasons for this is the availability of high-throughput platforms for multiplexed SNP ...
Studer, Bruno, Kölliker, Roland
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SNP Typing Strategies

Forensic Science International, 2004
Single nucleotide polymorphism (SNP) typing is likely to be an adjunct forensic technology to be used when short tandem repeat (STR) typing fails to yield a result or when only a partial profile is obtained. It is anticipated that forensic SNP analyses will be applied to typing mtDNA, Y chromosome lineage analyses, characterizing highly degraded DNA ...
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SNP

2008
P. Villars, K. Cenzual, J. Daams, R. Gladyshevskii, O. Shcherban, V. Dubenskyy, N. Melnichenko-Koblyuk, O. Pavlyuk, I. Savysyuk, S. Stoyko, L. Sysa   +10 more
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