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Allele-Specific PCR in SNP Genotyping
2009The increasing need for large-scale genotyping applications of single nucleotide polymorphisms (SNPs) in model and nonmodel organisms requires the development of low-cost technologies accessible to minimally equipped laboratories. The method presented here allows efficient discrimination of SNPs by allele-specific PCR in a single reaction with standard
Gaudet Muriel +3 more
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The MassARRAY® System for Targeted SNP Genotyping
2016Research to understand the genetic basis of disease, particularly complex disease, regularly involves single nucleotide polymorphism (SNP) genotyping. The use of genome-wide SNP genotyping arrays has become increasingly more commonplace for gene discovery. However, smaller-scale genotyping platforms capable of efficiently genotyping tens to hundreds of
Justine A, Ellis, Benjamin, Ong
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High-Throughput SNP Genotyping
2015The development of next-generation sequencing (NGS) methods has helped the emergence of single nucleotide polymorphism (SNP) as the marker of choice. The SNPs are becoming increasingly popular in view of their abundance, ease in discovery, and the extremely high-throughput SNP genotyping at relatively low cost per data point. High-throughput genotyping
B. D. Singh, A. K. Singh
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Machine Learning-Based Imputation of Missing SNP Genotypes in SNP Genotype Arrays
2013The missing value problem in SNP genotype data sets is introduced along with a short overview of two commonly used imputation algorithms, fastPHASE and KNNimpute, used to resolve the missing value problem for such data sets. A comparison of the two algorithms is provided with additional preliminary biological and mathematical background information for
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Missing SNP Genotype Imputation
2011High-throughput single nucleotide polymorphism (SNP) genotyping technologies conveniently produce large SNP genotype datasets for genome-wide linkage and association studies. Various factors, from array design and hybridization, can give rise to a certain percentage of missing calls, and the problem becomes severe when the target organisms such as ...
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SNP Genotyping by Using Photochemical Ligation
Angewandte Chemie International Edition, 2006Shinzi, Ogasawara, Kenzo, Fujimoto
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