Results 71 to 80 of about 7,231,771 (330)
StarBEAST2 Brings Faster Species Tree Inference and Accurate Estimates of Substitution Rates
bioRxiv, 2016 The multispecies coalescent (MSC) reconstructs species trees from a set of genes, and fully Bayesian MSC methods like *BEAST estimate species trees from multiple sequence alignments.
Huw A. Ogilvie +2 more
semanticscholar +1 more source
Sensitive protein alignments at tree-of-life scale using DIAMOND
Nature Methods, 2021 We are at the beginning of a genomic revolution in which all known species are planned to be sequenced. Accessing such data for comparative analyses is crucial in this new age of data-driven biology. Here, we introduce an improved version of DIAMOND that
Benjamin Buchfink, K. Reuter, H. Drost
semanticscholar +1 more source
Disordered but rhythmic—the role of intrinsic protein disorder in eukaryotic circadian timing
FEBS Letters, EarlyView.Unstructured domains known as intrinsically disordered regions (IDRs) are present in nearly every part of the eukaryotic core circadian oscillator. IDRs enable many diverse inter‐ and intramolecular interactions that support clock function. IDR conformations are highly tunable by post‐translational modifications and environmental conditions, which ...
Emery T. Usher, Jacqueline F. Pelham
wiley +1 more source
The Impact of Cross-Species Gene Flow on Species Tree Estimation
bioRxiv, 2019 Recent analyses of genomic sequence data suggest cross-species gene flow is common in both plants and animals, posing challenges to species tree inference.
Xiyun Jiao +3 more
semanticscholar +1 more source
Species Tree Estimation Using ASTRAL: How Many Genes Are Enough? [PDF]
IEEE/ACM Transactions on Computational Biology & Bioinformatics, 2017 Species tree reconstruction from genomic data is increasingly performed using methods that account for sources of gene tree discordance such as incomplete lineage sorting.
S. Shekhar, S. Roch, S. Mirarab
semanticscholar +1 more source
, 2020 Thirteen Acer species were found in Ooyamazawa riparian forest in Japan. Of these, the shrubby species A. carpinifolium and A. argutum and the tall tree species A. shirasawanum and A. mono were the most abundant. Sprouts of shrubby species were common, but not of tall tree species, which implies that individuals of shrubby species are maintained in the
Masako Kubo +3 more
openaire +1 more source
FEBS Letters, EarlyView.Cryptochrome and PAS/LOV proteins play intricate roles in circadian clocks where they act as both sensors and mediators of protein–protein interactions. Their ubiquitous presence in signaling networks has positioned them as targets for small‐molecule therapeutics. This review provides a structural introduction to these protein families.
Eric D. Brinckman +2 more
wiley +1 more source
Chromosome-level genome assembly of Nothapodytes nimmoniana
Scientific DataNothapodytes nimmoniana is a plant species belonging to the genus Nothapodytes in the family Icacinaceae. This species holds significant medicinal value due to its camptothecin content. In this study, we present the first chromosome-level genome assembly
Jiahui Wang +6 more
doaj +1 more source
Composition and Host-Use Patterns of a Scarab Beetle (Coleoptera: Scarabaeidae) Community Inhabiting the Canopy of a Lowland Tropical Rainforest in Southern Venezuela [PDF]
, 2019 The adult scarab beetle fauna of the canopy in a lowland tropical rainforest in southern Venezuela was observed and collected by means of a 42 m-tall tower crane for a complete year.
Kirmse, Susan, Ratcliffe, Brett C.
core +2 more sources
Consistency of SVDQuartets and Maximum Likelihood for Coalescent-based Species Tree Estimation
bioRxiv, 2019 Numerous methods for inferring species-level phylogenies under the coalescent model have been proposed within the last 20 years, and debates continue about the relative strengths and weaknesses of these methods.
M. Wascher, L. Kubatko
semanticscholar +1 more source