Results 81 to 90 of about 3,872,892 (256)
Results in EngineeringA drug molecule can be represented as an isomorphic molecular graph G(V, E), where the atoms form the vertex set V(G) and bonds between atoms constitute the edge set E(G). Topological indices are numerical values computed from isomorphic molecular graphs
C. Yogalakshmi, B. J. Balamurugan
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FEBS Open Bio, EarlyView.Unique biological samples, such as site‐specific mutant proteins, are available only in limited quantities. Here, we present a polarization‐resolved transient infrared spectroscopy setup with referencing to improve signal‐to‐noise tailored towards tracing small signals. We provide an overview of characterizing the excitation conditions for polarization‐
Clark Zahn, Karsten Heyne
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FEBS Open Bio, EarlyView.Time‐resolved X‐ray solution scattering captures how proteins change shape in real time under near‐native conditions. This article presents a practical workflow for light‐triggered TR‐XSS experiments, from data collection to structural refinement. Using a calcium‐transporting membrane protein as an example, the approach can be broadly applied to study ...
Fatemeh Sabzian‐Molaei +3 more
wiley +1 more source
A strong majority edge-coloring of a graph is an edge-coloring in which, for every edge $e$ and every color $i$, at most half of the edges adjacent to $e$ have color $i$. Such a coloring exists only for graphs with no pendant path of length two, which, following Kalinowski, Kamyczura, Pilśniak, and Woźniak, we call admissible.
Antoniuk, Sylwia +2 more
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Single‐molecule DNA flow‐stretch assays for high‐throughput DNA–protein interaction studies
FEBS Open Bio, EarlyView.We describe an optimised single‐molecule DNA flow‐stretch assay that visualises DNA–protein interactions in real time. Linear DNA fragments are tethered to a surface and stretched by buffer flow for fluorescence imaging. Using λ and φX174 DNA, this protocol enhances reproducibility and accessibility, providing a versatile approach for studying diverse ...
Ayush Kumar Ganguli +8 more
wiley +1 more source
Researches on the coloring of multigraphs [PDF]
Given a loopless multigraph $G$ and a vertex-function $f\ : \ V(G) \rightarrow \mathbb{N}\backslash \{0\}$, an {\bf $f$-(edge)-coloring} of $G$ is an assignment of colors to the edges of $G$ such that each color appears at each vertex $v\in V(G)$ at most
Hao, Yanli
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FEBS Open Bio, EarlyView.This protocol paper outlines methods to establish the success of a time‐resolved serial crystallographic experiment, by means of statistical analysis of timepoint data in reciprocal space and models in real space. We show how to amplify the signal from excited states to visualise structural changes in successful experiments.
Jake Hill +4 more
wiley +1 more source
Strong Ramsey Numbers of Graphs of Size 4
MathematicsThe Ramsey number R(G) of a graph G without isolated vertices is the minimum order n of the complete graph Kn for which every red-blue edge coloring results in a monochromatic subgraph isomorphic to G.
Gary Chartrand, Ping Zhang
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FEBS Open Bio, EarlyView.The dFoCC pipeline starts with observed DED and resting‐state coordinates, which are then used to generate a library of triggered states. Correlation analysis of the calculated DED features of each candidate vs observed DED permits quantitative evaluation of candidate structural quality.
Meng Iao Fong +3 more
wiley +1 more source
FEBS Open Bio, EarlyView.Abruptly changing from aerobic to anaerobic conditions (sudden anaerobization) induced growth inhibition and a significant increase in intracellular labile ferrous iron in the aerotolerant anaerobe Amphibacillus xylanus. We found that free flavins mediate efficient electron transfer from NADH to ferric iron under anaerobic conditions, suggesting that ...
Shinya Kimata +13 more
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