Results 121 to 130 of about 4,379 (204)

Linear-time computation of minimal absent words using suffix array. [PDF]

BMC Bioinformatics, 2014
Barton C, Heliou A, Mouchard L, Pissis SP.   +3 more
europepmc   +1 more source

Acceleration of short and long DNA read mapping without loss of accuracy using suffix array. [PDF]

Bioinformatics, 2014
Tárraga J, Arnau V, Martínez H, Moreno R, Cazorla D, Salavert-Torres J, Blanquer-Espert I, Dopazo J, Medina I.   +8 more
europepmc   +1 more source

Building genomic data structures from compressed representations using prefix-free parsing. [PDF]

Genome Res
Varki R, Boucher C.
europepmc   +1 more source

Suffix arrays in theory and practice.

, 2007
The suffix array of a string is a permutation of all starting positions of the string's suffixes in lexicographical order. In this thesis, we investigate mathematical and algorithmical aspects of suffix arrays. The first part mainly deals with combinatorial properties of suffix arrays and their enumeration.
openaire   +2 more sources

FastGA: fast genome alignment. [PDF]

Bioinform Adv
Myers G, Durbin R, Zhou C.
europepmc   +2 more sources

Pattern matching with Elastic-Degenerate strings and Elastic-Founder graphs. [PDF]

Algorithms Mol Biol
Ascone R, Bernardini G, Conte A, Equi M, Gabory E, Grossi R, Pisanti N.   +6 more
europepmc   +1 more source

ABMapper: a suffix array-based tool for multi-location searching and splice-junction mapping. [PDF]

Bioinformatics, 2011
Lou SK, Ni B, Lo LY, Tsui SK, Chan TF, Leung KS.   +5 more
europepmc   +1 more source

Explication of the Structure of Simple Persian Verbs and Their Governing Principles, With an Emphasis on Root Types and Morpheme Formation; A Linguistic Perspective [In Persian]

زبان کاوی کاربردی
The verb represents the most fundamental element across all global languages (a universal linguistic feature). Verbs occupy a central role within the framework of grammatical concordance (agreement between verb and subject). Language, as a dynamic social
Zahra Khosravi Dastgerdi, Ali Naseri Karimvand   +1 more
doaj  

Prefix-free parsing for merging big BWTs. [PDF]

Int Symp String Process Inf Retr
Díaz-Domínguez D, Gagie T, Guerrini V, Langmead B, Lipták Z, Manzini G, Masillo F, Shivakumar V.   +7 more
europepmc   +1 more source

Col-BWT: Pangenomic Seed Chaining with Maximal Matches Improves Read Classification. [PDF]

J Comput Biol
Brown NK, Shivakumar VS, Langmead B.
europepmc   +1 more source