Pengkontruksian Bidirected Overlap Graph untuk Perakitan Sekuens DNA
Jurnal Teknologi Informasi dan Ilmu Komputer, 2020 De novo DNA (Deoxyribonucleic Acid) sequence assembly atau perakitan sekuens DNA secara De novo adalah tahapan yang sangat penting dalam analisis sekuens DNA.
Wisnu Ananta Kusuma, Albert Adrianus
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RANCANG BANGUN APLIKASI PENCARIAN DOKUMEN BERBASIS WEB MENGGUNAKAN METODE SUFFIX CACTUS CLUSTERING
JUTI: Jurnal Ilmiah Teknologi Informasi, 2003 Salah satu bagian dari temu kembali (retrieval) informasi adalah menyajikan data hasil pencarian dengan cara mengelompokkan (clustering) seluruh dokumen hasil pencarian sesuai dengan kemiripan antar dokumen.
F. X. Arunanto, Agus Widodo
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BMC Bioinformatics, 2023 Background A large number of researchers have devoted to accelerating the speed of genome sequencing and reducing the cost of genome sequencing for decades, and they have made great strides in both areas, making it easier for researchers to study and ...
Zhiwen Lu +3 more
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What does visual suffix interference tell us about spatial location in working memory? [PDF]
, 2015 A visual object can be conceived of as comprising a number of features bound together by their joint spatial location. We investigate the question of whether the spatial location is automatically bound to the features or whether the two are separable ...
Allen, RJ +4 more
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An optimized FM-index library for nucleotide and amino acid search
Algorithms for Molecular Biology, 2021 Background Pattern matching is a key step in a variety of biological sequence analysis pipelines. The FM-index is a compressed data structure for pattern matching, with search run time that is independent of the length of the database text ...
Tim Anderson, Travis J. Wheeler
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SLDMS: A Tool for Calculating the Overlapping Regions of Sequences
Frontiers in Plant Science, 2022 In the field of genome assembly, contig assembly is one of the most important parts. Contig assembly requires the processing of overlapping regions of a large number of DNA sequences and this calculation usually takes a lot of time.
Yu Chen +4 more
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The FORGENIUS Genomic Resources: New Genotyping Tools and Genomic Data for 23 Forest Tree Species and Their Genetic Conservation Units. [PDF]
Mol Ecol ResourABSTRACT Genetic diversity is a critical but often overlooked component of biological diversity. The European H2020 FORGENIUS project is aimed at increasing the quality and quantity of genetic data to start monitoring the European network of forest Genetic Conservation Units (GCUs).
Pinosio S +14 more
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Fully-Functional Suffix Trees and Optimal Text Searching in BWT-runs Bounded Space [PDF]
, 2019 Indexing highly repetitive texts - such as genomic databases, software repositories and versioned text collections - has become an important problem since the turn of the millennium.
Gagie, Travis +2 more
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Optimal Substring-Equality Queries with Applications to Sparse Text Indexing
, 2020 We consider the problem of encoding a string of length $n$ from an integer alphabet of size $\sigma$ so that access and substring equality queries (that is, determining the equality of any two substrings) can be answered efficiently.
Prezza, Nicola
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Accelerated preprocessing in task of searching substrings in a string
Advanced Engineering Research, 2019 Introduction. A rapid development of the systems such as Yandex, Google, etc., has predetermined the relevance of the task of searching substrings in a string, and approaches to its solution are actively investigated. This task is used to create database
A. V. Mazurenko, N. V. Boldyrikhin
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