Results 81 to 90 of about 14,384 (164)

Faster computation of left-bounded shortest unique substrings. [PDF]

Algorithms Mol Biol
Aguiar LLM, Louza FA.
europepmc   +1 more source

A practical algorithm for finding maximal exact matches in large sequence datasets using sparse suffix arrays. [PDF]

Bioinformatics, 2009
Khan Z, Bloom JS, Kruglyak L, Singh M.
europepmc   +1 more source

Fast sequence alignment for centromeres with RaMA. [PDF]

Genome Res
Zhang P, Wei Y, Tian Q, Zou Q, Wang Y.
europepmc   +1 more source

Col-BWT: Pangenomic Seed Chaining with Maximal Matches Improves Read Classification. [PDF]

J Comput Biol
Brown NK, Shivakumar VS, Langmead B.
europepmc   +1 more source

Space-time Trade-offs for the LCP Array of Wheeler DFAs. [PDF]

Int Symp String Process Inf Retr, 2023
Cotumaccio N, Gagie T, Köppl D, Prezza N.   +3 more
europepmc   +1 more source

Mumemto: efficient maximal matching across pangenomes. [PDF]

Genome Biol
Shivakumar VS, Langmead B.
europepmc   +1 more source

Automation and machine learning drive rapid optimization of isoprenol production in Pseudomonas putida. [PDF]

Nat Commun
Carruthers DN, Kinnunen PC, Li Y, Chen Y, Gin JW, Yunus IS, Galliard WR, Tan S, Radivojevic T, Adams PD, Singh AK, Sustarich J, Petzold CJ, Mukhopadhyay A, Garcia Martin H, Lee TS.   +15 more
europepmc   +1 more source

Generating multiple alignments on a pangenomic scale. [PDF]

Bioinformatics
Olbrich J, Büchler T, Ohlebusch E.
europepmc   +1 more source

Efficient Construction and Utilization of k-Ordered FM-indexes with kISS for Ultra-Fast Read Mapping in Large Genomes. [PDF]

Bioinformatics
Yang ZD, Kuo HY, Hsieh PW, Hung JH.
europepmc   +1 more source

Computing Suffix Links for Suffix Trees and Arrays

, 2005
We present a new and simple algorithm to reconstruct suffix links in suffix trees and suffix arrays. The algorithm is based on observations regarding suffix tree construction algorithms. With our algorithm we bring suffix arrays even closer to the ease of use and implementation of suffix trees.
openaire   +1 more source