Results 101 to 110 of about 14,465 (182)

A novel linear indexing method for strings under all internal nodes in a suffix tree. [PDF]

Front Bioinform
Al-Okaily A, Tbakhi A.
europepmc   +1 more source

A practical algorithm for finding maximal exact matches in large sequence datasets using sparse suffix arrays. [PDF]

Bioinformatics, 2009
Khan Z, Bloom JS, Kruglyak L, Singh M.
europepmc   +1 more source

Elucidating Transitions of <i>k</i>-mer-Based Objects Across <i>k</i>-mer Sizes. [PDF]

J Comput Biol
Park A, Koslicki D.
europepmc   +1 more source

Faster computation of left-bounded shortest unique substrings. [PDF]

Algorithms Mol Biol
Aguiar LLM, Louza FA.
europepmc   +1 more source

Space-time Trade-offs for the LCP Array of Wheeler DFAs. [PDF]

Int Symp String Process Inf Retr, 2023
Cotumaccio N, Gagie T, Köppl D, Prezza N.   +3 more
europepmc   +1 more source

Fast sequence alignment for centromeres with RaMA. [PDF]

Genome Res
Zhang P, Wei Y, Tian Q, Zou Q, Wang Y.
europepmc   +1 more source

Mumemto: efficient maximal matching across pangenomes. [PDF]

Genome Biol
Shivakumar VS, Langmead B.
europepmc   +1 more source

Col-BWT: Pangenomic Seed Chaining with Maximal Matches Improves Read Classification. [PDF]

J Comput Biol
Brown NK, Shivakumar VS, Langmead B.
europepmc   +1 more source

Automation and machine learning drive rapid optimization of isoprenol production in Pseudomonas putida. [PDF]

Nat Commun
Carruthers DN, Kinnunen PC, Li Y, Chen Y, Gin JW, Yunus IS, Galliard WR, Tan S, Radivojevic T, Adams PD, Singh AK, Sustarich J, Petzold CJ, Mukhopadhyay A, Garcia Martin H, Lee TS.   +15 more
europepmc   +1 more source

Generating multiple alignments on a pangenomic scale. [PDF]

Bioinformatics
Olbrich J, Büchler T, Ohlebusch E.
europepmc   +1 more source