Results 121 to 130 of about 301,848 (186)

Approaches to Studying Viral Pangenome Variation Graphs. [PDF]

Genomics Proteomics Bioinformatics
Downing T.
europepmc   +1 more source

DeepSAP: improved RNA-seq alignment by integrating transcriptome guidance with transformer-based splice junction scoring. [PDF]

Genome Biol
Berakdar F, Wu TD, Zhu T, Samadi M, Vats P.   +4 more
europepmc   +1 more source

Fast sequence alignment for centromeres with RaMA. [PDF]

Genome Res
Zhang P, Wei Y, Tian Q, Zou Q, Wang Y.
europepmc   +1 more source

Mumemto: efficient maximal matching across pangenomes. [PDF]

Genome Biol
Shivakumar VS, Langmead B.
europepmc   +1 more source

Col-BWT: Pangenomic Seed Chaining with Maximal Matches Improves Read Classification. [PDF]

J Comput Biol
Brown NK, Shivakumar VS, Langmead B.
europepmc   +1 more source

Suffix Array

Journal of the Japanese Society for Artificial Intelligence, 2000
openaire   +1 more source

Computational tool choice impacts CRISPR spacer-protospacer detection. [PDF]

Bioinformatics
Neri U, Camargo AP, Bushnell B, Beeloo R, Roux S.   +4 more
europepmc   +1 more source

Efficient Construction and Utilization of k-Ordered FM-indexes with kISS for Ultra-Fast Read Mapping in Large Genomes. [PDF]

Bioinformatics
Yang ZD, Kuo HY, Hsieh PW, Hung JH.
europepmc   +1 more source

Generating multiple alignments on a pangenomic scale. [PDF]

Bioinformatics
Olbrich J, Büchler T, Ohlebusch E.
europepmc   +1 more source

Automation and machine learning drive rapid optimization of isoprenol production in Pseudomonas putida. [PDF]

Nat Commun
Carruthers DN, Kinnunen PC, Li Y, Chen Y, Gin JW, Yunus IS, Galliard WR, Tan S, Radivojevic T, Adams PD, Singh AK, Sustarich J, Petzold CJ, Mukhopadhyay A, Garcia Martin H, Lee TS.   +15 more
europepmc   +1 more source