Results 121 to 130 of about 58,659 (213)

Pluribus-Exploring the Limits of Error Correction Using a Suffix Tree. [PDF]

IEEE/ACM Trans Comput Biol Bioinform, 2017
Savel D, LaFramboise T, Grama A, Koyuturk M.   +3 more
europepmc   +1 more source

Parallel continuous flow: a parallel suffix tree construction tool for whole genomes. [PDF]

J Comput Biol, 2014
Comin M, Farreras M.
europepmc   +1 more source

Using the Sadakane compressed suffix tree to solve the all-pairs suffix-prefix problem. [PDF]

Biomed Res Int, 2014
Rachid MH, Malluhi Q, Abouelhoda M.
europepmc   +1 more source

Suffix tree searcher: exploration of common substrings in large DNA sequence sets. [PDF]

BMC Res Notes, 2014
Minkley D, Whitney MJ, Lin SH, Barsky MG, Kelly C, Upton C.   +5 more
europepmc   +1 more source

Finding maximal exact matches in graphs

Algorithms for Molecular Biology
Background We study the problem of finding maximal exact matches (MEMs) between a query string Q and a labeled graph G. MEMs are an important class of seeds, often used in seed-chain-extend type of practical alignment methods because of their strong ...
Nicola Rizzo, Manuel Cáceres, Veli Mäkinen   +2 more
doaj   +1 more source

FastGA: fast genome alignment. [PDF]

Bioinform Adv
Myers G, Durbin R, Zhou C.
europepmc   +2 more sources

Direct construction of sparse suffix arrays with Libsais. [PDF]

BMC Bioinformatics
Van de Vyver S, Moortele TV, Dawyndt P, Mesuere B, Verschaffelt P.   +4 more
europepmc   +1 more source

Research on genetic diversity and mating patterns of Toona fargesii populations based on SSR markers. [PDF]

BMC Plant Biol
Yang Q, Dai J, He L, Qiu Y, Zhang N, Hua K, Yu Y, Xu Q, Fan Y, Liu J.   +9 more
europepmc   +1 more source

Multi-stage bidirectional informed-RRT * plant protection UAV path planning method based on A * algorithm domain guidance. [PDF]

Front Plant Sci
Li J, Gao Y, Li Z, Zhang W, Yu W, Hu Y, Liu H, Li C.   +7 more
europepmc   +1 more source