Results 71 to 80 of about 40,875 (196)

Whole-Genome Alignment: Methods, Challenges, and Future Directions

Applied Sciences
Whole-genome alignment (WGA) is a critical process in comparative genomics, facilitating the detection of genetic variants and aiding our understanding of evolution. This paper offers a detailed overview and categorization of WGA techniques, encompassing
Bacem Saada, Tianchi Zhang, Estevao Siga, Jing Zhang, Maria Malane Magalhães Muniz   +4 more
doaj   +1 more source

Trees and graph packing [PDF]

, 2018
In this thesis we investigate two main topics, namely, suffix trees and graph packing problems. In Chapter 2, we present the suffix trees. The main result of this chapter is a lower bound on the size of simple suffix trees.
Vásárhelyi Bálint Márk
core  

Managing Unbounded-Length Keys in Comparison-Driven Data Structures with Applications to On-Line Indexing

, 2013
This paper presents a general technique for optimally transforming any dynamic data structure that operates on atomic and indivisible keys by constant-time comparisons, into a data structure that handles unbounded-length keys whose comparison cost is not
Amir, Amihood, Franceschini, Gianni, Grossi, Roberto, Kopelowitz, Tsvi, Lewenstein, Moshe, Lewenstein, Noa   +5 more
core   +1 more source

Caution Ahead: Numerical Reasoning and Look‐Ahead Bias in AI Models

Journal of Accounting Research, EarlyView.
ABSTRACT Recent work within accounting and finance has highlighted that modern AI systems exhibit superhuman performance on a variety of foundational activities within these fields. However, the literature often does not provide economic rationale for why AI models seem to outperform, largely because these models are a black box.
BRADFORD LEVY
wiley   +1 more source

Pattern matching through Chaos Game Representation: bridging numerical and discrete data structures for biological sequence analysis

Algorithms for Molecular Biology, 2012
Background Chaos Game Representation (CGR) is an iterated function that bijectively maps discrete sequences into a continuous domain. As a result, discrete sequences can be object of statistical and topological analyses otherwise reserved to numerical ...
Vinga Susana, Carvalho Alexandra M, Francisco Alexandre P, Russo Luís MS, Almeida Jonas S   +4 more
doaj   +1 more source

Suffix Trees Construction and Their Use in Bioinformatics [PDF]

, 2011
Práce se zabývá problematikou implementace sufixových stromů a jejich využití v bioinformatice. Jsou zde uvedeny různé druhy algoritmů pro tvorbu sufixových stromů. Především se zabývá implementací on-line metody pro tvorbu sufixového stromu navrženou E.
Hlaváček, Pavel
core  

On updating suffix tree labels

Theoretical Computer Science, 1998
zbMATH Open Web Interface contents unavailable due to conflicting licenses.
FERRAGINA, PAOLO, GROSSI, ROBERTO, Montangero M.   +2 more
openaire   +3 more sources

Integrated Methylome–Transcriptome Analysis Reveals Epigenomic Remodeling and Rho GTPase–Linked Immune–Epithelial Crosstalk in Atopic Dermatitis

Allergy, EarlyView.
Integrated methylome–transcriptome–microbiome analysis of AD skin identified thousands of DMRs. Rho GTPase signaling and actin–junctional programs emerged as central hubs integrating immune, epithelial, and microbial interactions in the pathogenesis of atopic dermatitis.
Tiina Skoog, Ying Yang, Peter Olah, Shintaro Katayama, Piia Karisola, Catherine Smith, Stephan Weidinger, Jonathan Barker, Antti Lauerma, Björn Andersson, Bernhard Homey, Nanna Fyhrquist, Juha Kere, Harri Alenius, MAARS Consortium, Francesca Levi‐Schaffer, Dario Greco, Stefanie Prast‐Nielsen, Vassili Soumelis, Sophia Tsoka, Jens M. Schröder, Frank O. Nestle, Philippe Hupé   +22 more
wiley   +1 more source

On the Use of Suffix Arrays for Memory-Efficient Lempel-Ziv Data Compression

, 2009
Much research has been devoted to optimizing algorithms of the Lempel-Ziv (LZ) 77 family, both in terms of speed and memory requirements. Binary search trees and suffix trees (ST) are data structures that have been often used for this purpose, as they ...
Ferreira, Artur, Figueiredo, Mario, Oliveira, Arlindo   +2 more
core   +1 more source

IN PURSUIT OF THE HOFFMANNESQUE

German Life and Letters, EarlyView.
ABSTRACT This article seeks to elucidate the term ‘Hoffmannesque’ — the eponymous adjective that refers to E. T. A. Hoffmann — through recourse to Hoffmann's own use of ‘esque’ words: arabesque, grotesque, burlesque, picturesque. By investigating the characteristics of ‘esque’ formulations and tracing their recurrence through Hoffmann's texts, I argue ...
Polly Dickson
wiley   +1 more source