Results 111 to 120 of about 46,398 (238)

Synteny plot quality control with SyntenyQC

SyntenyQC is a data pre-processing tool for the construction of synteny plots. It supports genomic data collection, annotation and dereplication to facilitate (and in some cases fundamentally enable) the construction of iinformative synteny ...
Zhao, Huimin, Connolly, Jack, Kirkwood, Timothy, Takano, Eriko; id_orcid, Ang, Ee Lui, Breitling, Rainer; id_orcid   +5 more
core   +2 more sources

SOI : robust identification of orthologous synteny with the Orthology Index and broad applications in evolutionary genomics [PDF]

With the explosive growth of whole-genome datasets, accurate detection of orthologous synteny has become crucial for reconstructing evolutionary history. However, current methods for identifying orthologous synteny face great limitations, particularly in
Van de Peer, YvesWE098010013230950000-0003-4327-3730F5A2BFFE-F0ED-11E1-A9DE-61C894A0A6B4, Shu, Heng, Ma, Yong-Peng, Milne, Richard Ian, Shang, Hong-Yun, Zhang, Ren-Gang, De Almeida Silva, FabricioWE090002116674378020039379338020039424780000-0002-5314-2964ad0664ed-82e9-11ec-ba1f-eeeae3cab260, Zhou, Min-Jie, Jia, Kai-Hua, Chen, HengchiWE090002010071378020034978940000-0003-1173-6622cde78d83-ec48-11ea-8cf2-efb14d09fec1   +9 more
core   +2 more sources

Functional Assessment of Orphan Proteins in the Streptomyces Pan-Proteome Through Genome-Wide Synteny Analysis

Microorganisms
Members of the genus Streptomyces possess large genomes, a vast and largely unexplored metabolic potential, and a distinctive life cycle characterized by pronounced morphological differentiation.
Matteo Calcagnile, Riccardo Conte, Pietro Alifano   +2 more
doaj   +1 more source

First genome sequence of a European Alternaria brassicae isolate and genes involved in early development of alternaria leaf spot on Brassica juncea

Pest Management Science, Volume 82, Issue 11, Page 10841-10854, November 2026.
This article reports the first genome sequence of a UK Alternaria brassicae isolate. Dual RNA‐sequencing profiling of A. brassicae‐infected Brassica juncea leaves identified differentially expressed genes involved in pathogenicity and host response pathways in moderately resistant Sej‐2 (2) and moderately susceptible Pusa Jaikisan cultivars.
Kevin M. King, Graham McLaughlin, Chinthani S. Karandeni Dewage, Zedi Gao, David J. Hughes, Jonathan S. West, Henrik U. Stotz   +6 more
wiley   +1 more source

The stress-induced transcription factor ATF4 has multiple conserved retrocopies that can alter gene expression

HGG Advances
Summary: The cell must defend against various stressors from internal and external sources that disrupt cell homeostasis. The integrated stress response (ISR) is a highly conserved pathway that helps restore this homeostasis through upregulating the ...
Hans M. Dalton, Elizabeth M. Brydon, Tiffany S. Chan, Katie G. Owings, Mandi M.L. Wild, Naomi J. Young, Clement Y. Chow   +6 more
doaj   +1 more source

Long Non‐Coding RNAs: Key Regulators of Economic Traits in Livestock From Mechanisms to Breeding Applications

Veterinary Medicine and Science, Volume 12, Issue 6, November 2026.
Long non‐coding RNAs (lncRNAs) act as key regulators of economically important traits in livestock through diverse mechanisms including ceRNA networks, epigenetic regulation (X‐inactivation and imprinting) and liquid–liquid phase separation (LLPS).
Keyvan Khani, Mohammad Taher Harkinezhad, Rahimeh Sepehri   +2 more
wiley   +1 more source

Synteny of CYP2 family genes.

, 2013
(A) Synteny of CYP2C23 genes. Only chicken had two CYP2C23 genes, whereas the other two birds possessed only one CYP2C23a gene. Avian CYP2C23 genes have been reported to be orthologous to human CYP2C62P, rat CYP2C23 and mouse CYP2C44.
Shin-Ichi Ikushiro (464564), Minami Kawata (464563), Kensuke P. Watanabe (464560), Yusuke K. Kawai (464561), Yoshinori Ikenaka (464562), Mayumi Ishizuka (264469), Toshiyuki Sakaki (464565)   +6 more
core   +1 more source

Genome Aging in Women: Hematopoietic Loss of X Chromosome as An Exemplar

Aging Cell, Volume 25, Issue 11, November 2026.
As studies at the intersection of genetics and aging are rapidly advancing, genome aging provides a novel mechanism by which aging phenotypes occur. In this Review, the authors examine the rise, expansion, and the consequences of X chromosome loss in female blood cells.
Xihan Guo, Xueqin Dai
wiley   +1 more source

Comparative genomics reveals lineage‐associated structural variation and diversification in a barley fungal pathogen

New Phytologist, Volume 252, Issue 4, Page 1565-1583, November 2026.
Genome‐wide copy‐number variation landscape highlights structural divergence across Puccinia hordei isolates and potentially links Cyp51 amplification to fungicide insensitivity. Summary Leaf rust, caused by Puccinia hordei, is a major barley disease worldwide.
Xiaohui Yu, Mumta Chhetri, Mafruha Hasan, Thomas H. Roberts, Peng Zhang, Robert F. Park, Yi Ding   +6 more
wiley   +1 more source

Synteny plot analysis of Cupriavidus replicons.

, 2015
(A) Synteny plot analysis of Chr1 from C. galardii CR3 and from 5 other finished Cupriavidus strains; (B) Synteny plot analysis of Chr 1 from C. galardii CR3 and pMOL30 from C. metallidurans CH34.
David E. Crowley (176796), Jiayan Wu (204411), Jingfa Xiao (134638), Jun Yu (5904), Meili Chen (278448), Zhewen Zhang (786354), Xiaoyu Wang (182979), Lirui Hao (786353), Mingxin Huo (422271), Ning Huang (623370)   +9 more
core   +1 more source