Results 91 to 100 of about 42,189 (273)

Visualizing genome synteny with xmatchview

The Journal of Open Source Software, 2017
Abstract In genomics research, the visual representation of DNA sequences is of prime importance. When displayed with additional information, or tracks, showing the position of annotated genes, alignments of sequence of interest, etc., these displays facilitate our understanding of genome and gene structure, and ...
openaire   +1 more source

Dissecting the genetic basis of climatic adaptation in wild relatives (Malus baccata) for climate‐resilient apple breeding

Journal of Integrative Plant Biology, EarlyView.
This comprehensive map of genetic variation in wild apple (Malus baccata) and set of key genes associated with adaptation to temperature, precipitation, and soil properties establishes a foundation for breeding climate‐resilient apple cultivars and conserving the genetic resources of wild crop relatives.
Ying Su, Yani Hao, Xuejing Cao, Lin Wang, Zhiqi Xu, Fan Zhang, Zhiyao Ma, Xu Wang, Jiacui Li, Tianrong Fan, Ruoyan Zhao, Zhongqi Liu, Wenrui Wang, Yingchun Zhang, Xuanwen Yang, Sifan Yang, Dajiang Wang, Kun Wang, Simiao Sun, Zichen Li, Wen Tian, Yanming Sun, Zhao Liu, Yanshuai Xu, Hua Xiao, Yanling Peng, Xiaodong Xu, Ruirui Liu, Xinmin Tian, Yongfeng Zhou, Yuan Gao   +30 more
wiley   +1 more source

Comparative Genomics and Phylogenomic Analysis of the Genus Salinivibrio

Frontiers in Microbiology, 2019
In the genomic era phylogenetic relationship among prokaryotes can be inferred from the core orthologous genes (OGs) or proteins in order to elucidate their evolutionary history and current taxonomy should benefits of that. The genus Salinivibrio belongs
Rafael R. de la Haba, Clara López-Hermoso, Cristina Sánchez-Porro, Konstantinos T. Konstantinidis, Antonio Ventosa   +4 more
doaj   +1 more source

Pangenome analysis reveals the genetic mechanism underlying high‐altitude adaptation in Qinghai–Xizang (Tibet) Plateau Rhododendron

Journal of Integrative Plant Biology, EarlyView.
Pan‐genome analysis reveals that high‐altitude Rhododendron species resist alpine cold stress by rapidly sensing and engaging the chilling response pathway and genes that directly and indirectly protect the plant from UV radiation. Heritable genomic features such as long terminal repeats contribute to the adaptive diversification of Rhododendron ...
Haoyang Zhou, Zhongping Xu, Fanhuang Zeng, Haiyu Sang, Zhenhua Liu, Miao Sun, Qiang Fu, Kaige Zhao, Daming Tan, Manzhu Bao, Shuangxia Jin, Xiuqun Liu   +11 more
wiley   +1 more source

Divergent roles of ent‐kaurene oxidase paralogs in rice momilactone biosynthesis

Journal of Integrative Plant Biology, EarlyView.
Rice contains a five‐gene tandem array of genes encoding members of the ent‐kaurene oxidase (KO) family, with OsKOL4 and OsKOL5 playing divergent roles in momilactone metabolism, but both acting in the production of antifungal and antibacterial phytoalexins, which are important for disease resistance.
Zhibiao Wang, Yiling Feng, Leiming You, Meimei Xu, Kristin Helwig, Riqing Li, Si Nian Char, Bing Yang, Reuben J. Peters   +8 more
wiley   +1 more source

High‐quality genome of elite peanut cultivar ZH05 reveals subgenome asymmetry, pan‐genome diversity, and breeding insights

Journal of Integrative Plant Biology, EarlyView.
A high‐quality reference genome for the elite peanut cultivar Zhonghua No. 5 revealed differing evolutionary paths between the two peanut subgenomes. SubA has higher overall gene expression and more open chromatin, whereas SubB has stronger structural organization, higher DNA methylation, and greater adaptive diversity associated with peanut evolution ...
Taihua Yang, Nian Liu, Li Huang, Jianbin Guo, Xiaomeng Xue, Mingjun Wang, Xiaohan Zhang, Chengtao Quan, Enyou Feng, Jiazhuang Tan, Zhenzhen Zhang, Yu You, Youlin Xia, Dongxin Huai, Yuning Chen, Liyin Yan, Kede Liu, Huifang Jiang, Yong Lei, Boshou Liao   +19 more
wiley   +1 more source

Structure and sequence evolution in the pennycress (Thlaspi arvense) pangenome. [PDF]

New Phytol
Summary Eukaryotic genomes harbor many forms of variation, including nucleotide diversity and structural polymorphisms, which experience natural selection and contribute to genome evolution and biodiversity. Harnessing this variation for agriculture hinges on our ability to detect, quantify, catalog, and deploy genetic diversity. Here, we explore seven
Bird KA, Rifkin JL, McLaughlin CM, Harder AM, Basnet P, Katz E, Brůna T, Barry K, Boston L, Daum C, Guo J, Lipzen A, Plott C, Jenkins JW, Walstead R, Rajasekar S, Talag J, Frels K, Greenham K, Ellison S, Grimwood J, Schmutz J, Edger PP, Pires JC, Lovell JT, Kliebenstein DJ.   +25 more
europepmc   +2 more sources

A chromosome-level genome assembly of Solanum brevicaule (PI 473011) Y1-5, a wild potato relative with robust resistance to potato cyst nematodes. [PDF]

Plant Genome
Abstract Potato cyst nematodes (PCNs), Globodera rostochiensis and Globodera pallida, are globally recognized quarantine pests that can cause severe yield losses in potatoes (Solanum tuberosum L.) if left uncontrolled. Deploying host resistance remains the most effective, economical, and environmentally sustainable strategy for PCN control.
Shanmugavel S, Hu S, Yang H, Chen S, Bamberg J, Zhao D, Basnet BR, Beil CT, Sheehan M, Sathuvalli V, Wang X.   +10 more
europepmc   +2 more sources

Synteny of CYP2 family genes.

, 2013
(A) Synteny of CYP2C23 genes. Only chicken had two CYP2C23 genes, whereas the other two birds possessed only one CYP2C23a gene. Avian CYP2C23 genes have been reported to be orthologous to human CYP2C62P, rat CYP2C23 and mouse CYP2C44.
Shin-Ichi Ikushiro (464564), Minami Kawata (464563), Kensuke P. Watanabe (464560), Yusuke K. Kawai (464561), Yoshinori Ikenaka (464562), Mayumi Ishizuka (264469), Toshiyuki Sakaki (464565)   +6 more
core   +1 more source

Complete organellar genomes of Cystophora brownii: Insights into mitochondrial and plastid structure and evolution in brown algae

Journal of Phycology, EarlyView.
Abstract Cystophora (order Fucales) is one of the most diverse genera of habitat‐forming brown algae and is endemic to temperate reefs of Australia and New Zealand. Species in this genus form complex habitat structures that support diverse marine communities and contribute to coastal productivity. However, Cystophora spp.
Jane M. Edgeloe, Samuel Starko, Georgina V. Wood, Albert Pessarrodona, Antoine J. P. Minne, Thomas Wernberg   +5 more
wiley   +1 more source