Results 71 to 80 of about 46,398 (238)

Molecular Mapping in Barley: Shifting from the Structural to the Functional Level

Czech Journal of Genetics and Plant Breeding, 2005
As a resource for structural and functional barley genome analysis, more than 140 000 ESTs (expressed sequence tags) were generated from 22 cDNA libraries that yielded 25 224 tentative unigenes. About 50% of them belong to gene families.
A Graner, T Thiel, H Zhang, E Potokina, M Prasad, D Perovic, R Kota, R K Varshney, U Scholz, I Grosse, N Stein   +10 more
doaj   +1 more source

Genoplot R package script for synteny plots

, 2019
Genoplot R package script for synteny ...
Sabina Tralamazza (7254779)
core   +1 more source

Genomic Diversity of the Endangered Guinan Toad‐Headed Lizard and Its Conservation Implications

Integrative Zoology, EarlyView.
We produced HiFi long reads and assembled a high‐quality genome for the Guinan toad‐headed lizard—Phrynocephalus guinanensis—and present a comprehensive conservation genomics assessment. Our findings clearly show population structure, a reduced genetic diversity pattern, and a strong bottleneck in demographic history, reaffirming the endangered status ...
Ying Chen, Song Tan, Yiru Wang, Xia Qiu, Da Kang, Weizhao Yang   +5 more
wiley   +1 more source

Comparative Genomics and Phylogenomic Analysis of the Genus Salinivibrio

Frontiers in Microbiology, 2019
In the genomic era phylogenetic relationship among prokaryotes can be inferred from the core orthologous genes (OGs) or proteins in order to elucidate their evolutionary history and current taxonomy should benefits of that. The genus Salinivibrio belongs
Rafael R. de la Haba, Clara López-Hermoso, Cristina Sánchez-Porro, Konstantinos T. Konstantinidis, Antonio Ventosa   +4 more
doaj   +1 more source

Chromosome‐Level Genome Assembly of Strauchbufo raddei and Multi‐Omic Insights Into Drought Adaptation

Integrative Zoology, EarlyView.
ABSTRACT Understanding how amphibians adapt to terrestrial and arid environments is important for elucidating vertebrate terrestrialization. In this study, we present the first chromosome‐level, high‐quality genome assembly of Strauchbufo raddei, constructed using PacBio HiFi long‐read sequencing and Hi‐C scaffolding. The assembled genome is 4.47 Gb in
Fanrui Chen, Rui Su, Chengqi Wang, Shengnan Wang, Jinjing Wang, Yuquan Miao, Wenya Zhang, Wei Zhao   +7 more
wiley   +1 more source

HGTScanner: Detecting horizontal gene transfer at the fine scale using whole organelle genomes

Methods in Ecology and Evolution, EarlyView.
Abstract Horizontal gene transfer (HGT) has profoundly shaped eukaryotic organellar genomes like plant mitochondria. Yet no generalized tools are currently available to efficiently characterize HGT across these genomes due to both high structural complexity and low sequence divergence compared to prokaryotic HGTs.
Liming Cai, Rachel O. Cohen
wiley   +1 more source

Aligning a new reference genetic map of lupinus angustifolius with the genome sequence of the model legume, Lotus japonicus [PDF]

, 2009
We have developed a dense reference genetic map of Lupinus angustifolius (2n = 40) based on a set of 106 publicly available recombinant inbred lines derived from a cross between domesticated and wild parental lines.
Moolhuijzen, P.M., Swiecicki, W., K. Lesniewska, Cowling, W.A., Ellwood, Simon, Matthew N. Nelson, Paula M. Moolhuijzen, S. R. Ellwood, M. Chudy, Oliver, R.P., Simon R. Ellwood, Richard P. Oliver, Wallace A. Cowling, W. A. Cowling, Boersma, J.G., Ellwood, S.R., Magdalena Chudy, Matthew Bellgard, Oliver, Richard, B. Wolko, Chudy, M., Cowling, W., Boersma, J., Nelson, M., R. P. Oliver, J. G. Boersma, Lesniewska, K., Moolhuijzen, P., Bellgard, M., Nelson, M.N., Wolko, B., M. Bellgard, M. N. Nelson, Wolko, B.W., Karolina Lesniewska, Bogdan Wolko, P. M. Moolhuijzen, Jeffrey G. Boersma, W. Swiecicki   +38 more
core   +2 more sources

Insights into tandem dioxygenases—copper radical oxidases in fungal Phytopathogens of the Colletotrichum acutatum species complex

The FEBS Journal, EarlyView.
In Colletotrichum acutatum species complex, conserved ring‐cleavage dioxygenases located adjacent to AA5_2 enzymes were investigated as potential redox partners. Biochemical analyses identified the dioxygenases as intradiol‐cleaving enzymes preferentially oxidizing methyl‐substituted catechols, while AA5_2 enzymes displayed weak alcohol oxidase ...
Radka Končitíková, David Ribeaucourt, Mireille Haon, David Navarro, Elodie Drula, Bastien Bissaro, Jean‐Guy Berrin, Mickael Lafond   +7 more
wiley   +1 more source

Genome assembly of Elcysma westwoodi provides insights into host‐plant cyanogenic glucoside detoxification and chemical defence gene evolution

Insect Molecular Biology, EarlyView.
A chromosome‐level genome of Elcysma westwoodi was assembled. The genome encodes 272 detoxification‐related genes. A single‐copy bCAS was retained for cyanide detoxification. CYP405A and CYP332A were recruited into cyanogenic defence evolution. UGT33A retained a conserved GT‐B fold and catalytic domains.
Minyoung Choi, Murtaza Khan, Juil Kim
wiley   +1 more source

Synteny analysis of β-gal genes of A. fumigatus and A. oryzae.

, 2023
Red lines indicate the presence of a synteny/evolutionary relationship for β-gal genes and gray lines indicate synteny of all other genes of their genome. No synteny was observed in all other pairs of organisms with respect to β-gal.
Muhammad Faraz Bhatti (12275317), Danish Ilyas Baig (16425869), Haris Ahmed Khan (12971276), Zeeshan Zafar (10756807), Amna Younus (14799597)   +4 more
core   +1 more source