Results 81 to 90 of about 46,398 (238)

High‐quality genome of elite peanut cultivar ZH05 reveals subgenome asymmetry, pan‐genome diversity, and breeding insights

Journal of Integrative Plant Biology, EarlyView.
A high‐quality reference genome for the elite peanut cultivar Zhonghua No. 5 revealed differing evolutionary paths between the two peanut subgenomes. SubA has higher overall gene expression and more open chromatin, whereas SubB has stronger structural organization, higher DNA methylation, and greater adaptive diversity associated with peanut evolution ...
Taihua Yang, Nian Liu, Li Huang, Jianbin Guo, Xiaomeng Xue, Mingjun Wang, Xiaohan Zhang, Chengtao Quan, Enyou Feng, Jiazhuang Tan, Zhenzhen Zhang, Yu You, Youlin Xia, Dongxin Huai, Yuning Chen, Liyin Yan, Kede Liu, Huifang Jiang, Yong Lei, Boshou Liao   +19 more
wiley   +1 more source

Recent advances in the genomics of sugarcane (Saccharum)

Journal of Integrative Plant Biology, EarlyView.
This review systematically summarizes advances in sugarcane genomics, evolution, classification, and breeding practices. It identifies key research bottlenecks and proposes an integrated research framework to facilitate predictive sugarcane breeding, which provides valuable references for genetic improvement of other complex polyploid crops.
Tianyou Wang, Qin Zhang, Qiutao Xu, Han Zhao, Zhen Li, Jisen Zhang   +5 more
wiley   +1 more source

DRIMM-Synteny: decomposing genomes into evolutionary conserved segments

, 2010
Motivation The rapidly increasing set of sequenced genomes high-lights the importance of identifying the synteny blocks in multiple and/or highly duplicated genomes.
Son K. Pham, Pavel A. Pevzner
core   +2 more sources

The rise and fall of breakpoint reuse depending on genome resolution

BMC Bioinformatics, 2011
Background During evolution, large-scale genome rearrangements of chromosomes shuffle the order of homologous genome sequences ("synteny blocks") across species.
Darling Aaron E, Attie Oliver, Yancopoulos Sophia   +2 more
doaj   +1 more source

Nested Inversions Are Always Amalgamated by ST-Synteny

, 2013
The dot-plot of a signed permutation of anchors (green) between two genomes is shown. Since the anchors are signed, they are represented as ±45-degree segments. Blocks were constructed by ST-Synteny (red) and GRIMM-Synteny (blue).
Pavel A Pevzner (16055), Glenn Tesler (274804), Qian Peng (74762)   +2 more
core   +1 more source

Conservation of long-range synteny and microsynteny between the genomes of two distantly related nematodes [PDF]

, 2002
Comparisons between the genomes of the closely related nematodes Caenorhabditis elegans and Caenorhabditis briggsae reveal high rates of rearrangement, with a bias towards within-chromosome events.
CH Corton, SJM Jones, BG Barrell, Hall, N, Blaxter, Mark, Guiliano, D B, LN Clark, Barrell, B G, Corton, C H, Blaxter, M L, N Hall, DB Guiliano, Clark, L N, Jones, S J M, ML Blaxter, Jones, S.J.M., Guiliano, D.B., Clark, L.N., Hall, N., Barrell, B.G., Corton, C.H., Blaxter, M.L.   +21 more
core   +1 more source

T2T genome assembly and CRISPR/Cas9 editing of Medicago lupulina

Journal of Integrative Plant Biology, EarlyView.
A complete, gap‐free genome of Medicago lupulina, a tough, high‐protein forage legume, and a gene‐editing tool for this species, which was used to alter its leaf shape, provide key resources for improving alfalfa and breeding better forage crops for high‐altitude environments.
Qing Yuan, Cheng Li, Guangyan Wang, Wenfei Dai, Eerdungaridi, Di Wu, Qingdun Fan, Yongping Yang, Yuanwen Duan, Xudong Sun   +9 more
wiley   +1 more source

Genome Identification of B-BOX Gene Family Members in Seven Rosaceae Species and Their Expression Analysis in Response to Flower Induction in Malus domestica

Molecules, 2018
BBX proteins play important roles in regulating plant growth and development including photomorphogenesis, photoperiodic regulation of flowering, and responses to biotic and abiotic stresses.
Abdullah Shalmani, Sheng Fan, Peng Jia, Guofang Li, Izhar Muhammad, Youmei Li, Rahat Sharif, Feng Dong, Xiya Zuo, Ke Li, Kun-Ming Chen, Mingyu Han   +11 more
doaj   +1 more source

S‑glutathionylation of MaWRKY44 orchestrates a MaZFP139‐MaWRKY44‐MaGSTU07 cascade to enhance banana cold tolerance

Journal of Integrative Plant Biology, EarlyView.
In banana, at low temperatures (7°C), the transcription factor MaZFP139 activates MaWRKY44 expression. MaWRKY44 binds to the W‐box sites in the promoter of the glutathione S‐transferase gene MaGSTU07 to enhance reactive oxygen species scavenging. S‐glutathionylation protects MaWRKY44 from oxidation‐induced degradation, reinforcing antioxidant defenses ...
Shuqin Lin, Wen Song, Shaoting Liao, Haike Tan, Jianji Qi, Danling Cai, Wei Wei, Wei Shan, Jianfei Kuang, Jianye Chen, Wangjin Lu   +10 more
wiley   +1 more source

Identification, Classification, and Expression Analysis of GRAS Gene Family in Malus domestica

Frontiers in Physiology, 2017
GRAS genes encode plant-specific transcription factors that play important roles in plant growth and development. However, little is known about the GRAS gene family in apple.
Mingyu Han, Sheng Fan, Dong Zhang, Cai Gao, Ming Zhao, Haiqin Wu, Youmei Li, Yawen Shen   +7 more
doaj   +1 more source