Results 151 to 160 of about 42,189 (273)
Network approaches for plant phylogenomic synteny analysis
, 2017 Network analysis approaches have been widely applied across disciplines. In biology, network analysis is now frequently adopted to organize protein–protein interactions, organize pathways and/or to interpret gene co-expression patterns.
Schranz, Eric, Zhao, Tao
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iMetaOmics, Volume 3, Issue 2, June 2026.Genome surveillance across a swine‐associated One Health continuum in China shows that slaughterhouses act as major enrichment nodes for tet(X4)‐mediated tigecycline resistance, driven by putative clonal transmission and stable plasmid backbones. Integrating global datasets enables lineage‐specific risk stratification, highlighting key control points ...
Qin Wang +10 more
wiley +1 more source
Genome‐Wide In Silico Analysis of the Type VI Secretion System (T6SS) Within the Morganella Genus
MicrobiologyOpen, Volume 15, Issue 3, June 2026.▪ Species‐specific T6SS patterns among Morganella genus (M. morganii and M. sibonii). ▪ Only one‐third of M. morganii isolates haboured a T6SS. ▪ All M. sibonii possess four T6SS clusters. ▪ M. sibonii exhibited a wide diversity of effectors compared to M. morganii.
Mathilde Duque +4 more
wiley +1 more source
Emerging Dissemination of blaCTX‐M‐65 in Bovine E. coli in Spain Associated With IncHI2 Plasmids
MicrobiologyOpen, Volume 15, Issue 3, June 2026.The resistome in ESBL/AmpC‐producing E. coli in livestock was diverse and dominated by plasmid‐borne genes Detection of host‐independent dissemination of AMR determinants mediated by shared plasmid types First report in Spanish cattle of blaCTX‐M‐65 on IncHI2 plasmids, an under‐reported ESBL in Europe Identification of potentially zoonotic clones in ...
Medelin Ocejo +2 more
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MicrobiologyOpen, Volume 15, Issue 3, June 2026.An analysis of the accessory genomes from 77 Escherichia coli O157:H7 strains using network and machine learning techniques uncovers modular communities of plasmid‐related virulence associated with IncF replicons. Accessory markers that are not directly linked to toxin genes can effectively predict the virulence status with an AUC of 0.85, facilitating
Sydney Menzeko Gambushe +1 more
wiley +1 more source
Scripts and data files for cetacean genomes multiple alignment and synteny ...
Taylor Hains, Phillip Morin
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New Zealand Journal of Zoology, Volume 53, Issue 2, June 2026.Pest control is a global challenge for agriculture and biodiversity conservation, with the use of existing vertebrate pesticides increasingly constrained by regulatory, environmental, and social pressures. There is an urgent need for safer and more species‐selective toxicants, but the development of novel vertebrate pesticides remains technically ...
Erica R. Hendrikse +3 more
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Plant-Environment Interactions, Volume 7, Issue 3, June 2026.ABSTRACT The increasing frequency and intensity of climate‐associated abiotic stresses highlight the need to better understand soybean stress‐response mechanisms. In this study, transcriptomic data from 112 soybean samples exposed to multiple abiotic stress conditions, including drought, salinity, and heavy‐metal stress, were integrated using a multi ...
Zohreh Hajibarat, Abbas Saidi
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(A) Synteny analysis of PIFs in the wheat genome. Isomorphic TaPIF gene pairs are connected with red lines. (B) Synteny analysis of Di19 genes in wheat, Oryza sativa, Arabidopsis thaliana, and Brachypodium distachyon.
Hua Zhuang (6808976) +3 more
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KEGG Syntax for comparison of organisms, organism groups, and viruses by conserved gene repertoires
Protein Science, Volume 35, Issue 6, June 2026.Abstract The KEGG Orthology (KO) system has been used as a basic framework of the KEGG database for linking genes in the genome to pathways and other molecular networks. KOs are manually defined orthologs representing conserved genes with relevance to molecular and higher‐level functions.
Minoru Kanehisa, Yoko Sato
wiley +1 more source