Results 211 to 220 of about 59,285 (253)

MizBee: A Multiscale Synteny Browser

IEEE Transactions on Visualization and Computer Graphics, 2009
In the field of comparative genomics, scientists seek to answer questions about evolution and genomic function by comparing the genomes of species to find regions of shared sequences. Conserved syntenic blocks are an important biological data abstraction for indicating regions of shared sequences.
Miriah D. Meyer, Tamara Munzner, Hanspeter Pfister   +2 more
openaire   +2 more sources

SyDiG: uncovering Synteny in Distant Genomes [PDF]

International Journal of Bioinformatics Research and Applications, 2011
Current methods for detecting synteny work well for genomes with high degrees of inter- and intra-species chromosomal homology, such as mammals. This paper presents a new algorithm for synteny computation that is well suited to genomes covering a large evolutionary span.
Macha Nikolski
exaly   +3 more sources

Synteny mapping in river buffalo

Mammalian Genome, 1996
The cosegregation of ten coding loci has been investigated, in a panel of 37 somatic cell hybrids resulting from the fusion of a hamster cell line and river buffalo lymphocytes, by use of Southern hybridization technique. Five syntenic groups, TCRB-PGY3, ASS-ABL, FUCA1P-CRYG, MBP-YES1, and CGN1-ACTA1, previously assigned to cattle as U13, U16, U17, U28,
S M, El Nahas, H A, Oraby, H A, de Hondt, A M, Medhat, M M, Zahran, E R, Mahfouz, A M, Karim   +6 more
openaire   +2 more sources

Synteny and Collinearity in Plant Genomes

Science, 2008
Correlated gene arrangements among taxa provide a valuable framework for inference of shared ancestry of genes and for the utilization of findings from model organisms to study less-well-understood systems. In angiosperms, comparisons of gene arrangements are complicated by recurring polyploidy and extensive genome rearrangement.
Haibao, Tang, John E, Bowers, Xiyin, Wang, Ray, Ming, Maqsudul, Alam, Andrew H, Paterson   +5 more
openaire   +2 more sources

Genetic Maps and the Use of Synteny

2009
Genetic linkage maps represent the order of known molecular genetic markers along a given chromosome for a given species. This provides an insight into the organisation of a plant genome. In comparative genomics, synteny is the preserved order of genes on chromosomes of related species which results from descent from a common ancestor.
Duran, C., Edwards, D., Batley, J.
openaire   +4 more sources

Gene synteny in species of Plasmodium

Molecular and Biochemical Parasitology, 1998
We have attempted to establish the degree of linkage conservation between different species of the malaria parasite Plasmodium. Initially, the chromosome locations of 42 homologous genes were established in parasites from a rodent malaria species and the human malaria parasite P. falciparum.
J M, Carlton, R, Vinkenoog, A P, Waters, D, Walliker   +3 more
openaire   +2 more sources

Conserved Synteny and the Zebrafish Genome

2011
Zebrafish offers significant opportunities for the investigation of vertebrate development, evolution, physiology, and behavior and provides numerous models of human disease. Connecting zebrafish phenogenetic biology to that of humans and other vertebrates, however, requires the proper assignment of gene orthologies.
Julian M, Catchen, Ingo, Braasch, John H, Postlethwait   +2 more
openaire   +2 more sources

Synteny in the Rosaceae

2006
International ...
Arus, Pere, Yamamoto, Toshiya, Dirlewanger, Elisabeth, Abott, Albert G.   +3 more
openaire   +1 more source

Synteny and Genomic Rearrangements

2012
The concept of synteny, derived from the Greek syn tene (‘same thread’) has come to refer broadly to parallels in gene arrangement in divergent genomes. Gene collinearity, a special case of synteny in which groups of genes occur in largely corresponding orders along the chromosomes of respective genomes, provides valuable information for inferring gene
A. H. Paterson, X. Wang, H. Tang, T. H. Lee   +3 more
openaire   +1 more source

Optimal algorithms for uncovering synteny problem

Journal of Combinatorial Optimization, 2006
zbMATH Open Web Interface contents unavailable due to conflicting licenses.
Chen Ting, H. E. Yong
exaly   +3 more sources