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2013
Tandem repeats constitute a consistent fraction of eukaryotic genomes and are given by monomers or gene clusters repeated in a head-to-tail direction. Main examples are represented by microsatellites, minisatellites, satellites, rDNA genes, and protein-coding genes.
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Tandem repeats constitute a consistent fraction of eukaryotic genomes and are given by monomers or gene clusters repeated in a head-to-tail direction. Main examples are represented by microsatellites, minisatellites, satellites, rDNA genes, and protein-coding genes.
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An algorithm for approximate tandem repeats
2005A perfect tandem repeat within a string S is a substring r = r1,... r2l of S, for which r1 ... rl = rl+1 ... r2l. An approximate tandem repeat is a substring r = r1,..., rl′,... rl, for which r1,..., rl′ and rl′+1, ... rl are similar. In this paper we consider two criterions of similarity: the Hamming distance (k mismatches) and the edit distance (k ...
Gad M. Landau, Jeanette P. Schmidt
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Mechanisms of tandem repeat instability in bacteria
Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis, 2006Hypermutable tandem repeat sequences (TRSs) are present in the genomes of both prokaryotic and eukaryotic organisms. Numerous studies have been conducted in several laboratories over the past decade to investigate the mechanisms responsible for expansions and contractions of microsatellites (a subset of TRSs with a repeat length of 1-6 nucleotides) in ...
Bichara, Marc +2 more
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Short Tandem Repeats and Genetic Variation
2010Single nucleotide polymorphisms (SNPs) are widely distributed in the human genome and although most SNPs are the result of independent point-mutations, there are exceptions. When studying distances between SNPs, a periodic pattern in the distance between pairs of identical SNPs has been found to be heavily correlated with periodicity in short tandem ...
Madsen, Bo Eskerod +2 more
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Clustering Tandem Repeats via Trinucleotides
2012 IEEE 12th International Conference on Data Mining Workshops, 2012Tandem repeats in DNA sequences are extremely relevant in biological phenomena and diagnostic tools. Computational programs that discover these tandem repeats generate a huge volume of data, which is often difficult to decipher without further organization.
Yupu Liang, Dina Sokol, Sarah Zelikovitz
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Classification of Tandem Repeats in the Human Genome
International Journal of Knowledge Discovery in Bioinformatics, 2012Tandem repeats in DNA sequences are extremely relevant in biological phenomena and diagnostic tools. Computational programs that discover these tandem repeats generate a huge volume of data, which is often difficult to decipher without further organization.
Yupu Liang +3 more
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Short tandem repeats and tandem repeat disorders
SCIENTIA SINICA VitaeRunZe MA, TianCheng LIU, Bing ZHU
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Polymorphic short tandem repeats make widespread contributions to blood and serum traits
Cell Genomics, 2023Alon Goren +2 more
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Disease-Associated Short Tandem Repeats Co-localize with Chromatin Domain Boundaries
Cell, 2018Beverly L Davidson +2 more
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