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Using R in Taverna: RShell v1.2 [PDF]

open access: yesBMC Research Notes, 2009
Background R is the statistical language commonly used by many life scientists in (omics) data analysis. At the same time, these complex analyses benefit from a workflow approach, such as used by the open source workflow management system Taverna ...
Anton Nijholt   +2 more
exaly   +13 more sources

Taverna, Reloaded [PDF]

open access: yesLecture Notes in Computer Science, 2010
The Taverna workflow management system is an open source project with a history of widespread adoption within multiple experimental science communities, and a long-term ambition of effectively supporting the evolving need of those communities for complex, data-intensive, service-based experimental pipelines.
Ian Dunlop   +2 more
exaly   +6 more sources

CDK-Taverna: an open workflow environment for cheminformatics [PDF]

open access: yesBMC Bioinformatics, 2010
Background Small molecules are of increasing interest for bioinformatics in areas such as metabolomics and drug discovery. The recent release of large open access chemistry databases generates a demand for flexible tools to process them and discover new ...
Zielesny Achim   +3 more
doaj   +4 more sources

Metadata Management in the Taverna Workflow System [PDF]

open access: yes2008 Eighth IEEE International Symposium on Cluster Computing and the Grid (CCGRID), 2008
There seems to be a general consensus on the crucial role metadata can play for enhancing the functionalities of scientific workflows systems, e.g., workflow and service discovery, composition and provenance browsing, among others. However, in most cases their management is under-specified, if not left unaddressed at all.
Khalid Belhajjame   +2 more
exaly   +5 more sources

Discorsi di Taverna

open access: yesMimesis Journal, 2016
Discorsi di Taverna is a dialogue and the presentation of a dramaturgical process made by the artistic collective Babel Crew. Giuseppe Provinzano, author and actor, together with Gabriele Cappadona, economist and dramaturg of the play 1,2,3 crisi ovvero ...
Gabriele Cappadona, Giuseppe Provinzano
doaj   +3 more sources

Taverna: a tool for building and running workflows of services [PDF]

open access: yesNucleic Acids Research, 2006
Taverna is an application that eases the use and integration of the growing number of molecular biology tools and databases available on the web, especially web services. It allows bioinformaticians to construct workflows or pipelines of services to perform a range of different analyses, such as sequence analysis and genome annotation. These high-level
Peter Li   +2 more
exaly   +4 more sources

Cancer patients with COVID-19: a retrospective study of 51 patients in the district of Piacenza, Northern Italy

open access: yesFuture Science OA, 2021
Background: Cancer patients are considered a highly fragile group in the current coronavirus disease 2019 (COVID-19) pandemic. Material & methods: In this study, patients with COVID-19 and cancer, hospitalized in Piacenza, Italy, from 4 April to 4 May ...
Luigi Cavanna   +11 more
doaj   +1 more source

Association between Mortality and Lung Low Attenuation Areas in NSCLC Treated by Surgery

open access: yesLife, 2023
Background: to test the association with overall survival (OS) of low attenuation areas (LAAs) quantified by staging computed tomography (CT) of patients who underwent radical surgery for nonsmall-cell lung cancer (NSCLC). Methods: patients who underwent
Davide Colombi   +7 more
doaj   +1 more source

Swyer-James-MacLeod syndrome presenting as spontaneous pneumothorax in an adult: Case report and review of literature

open access: yesRadiology Case Reports, 2021
Swyer-James-MacLeod Syndrome (SJMS) is an uncommon, emphysematous disease characterized by obliteration of the small bronchioles, hypoplasia/or absence of pulmonary artery and peripheral vascular bed. It is most commonly diagnosed in childhood.
Luigi Conti, MD   +5 more
doaj   +1 more source

Software-Based Assessment of Well-Aerated Lung at CT for Quantification of Predicted Pulmonary Function in Resected NSCLC

open access: yesLife, 2023
Background: To test the agreement between postoperative pulmonary function tests 12 months after surgery (mpo-PFTs) for non-small cell lung cancer (NSCLC) and predicted lung function based on the quantification of well-aerated lung (WAL) at staging CT ...
Davide Colombi   +8 more
doaj   +1 more source

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