Results 41 to 50 of about 7,249,127 (302)

Topological data analysis reveals genotype–phenotype relationships in primary ciliary dyskinesia

open access: yesEuropean Respiratory Journal, 2021
Background Primary ciliary dyskinesia (PCD) is a heterogeneous inherited disorder caused by mutations in approximately 50 cilia-related genes. PCD genotype–phenotype relationships have mostly arisen from small case series because existing statistical ...
A. Shoemark   +29 more
semanticscholar   +1 more source

Quantum algorithm for persistent Betti numbers and topological data analysis [PDF]

open access: yesQuantum, 2021
Topological data analysis (TDA) is an emergent field of data analysis. The critical step of TDA is computing the persistent Betti numbers. Existing classical algorithms for TDA are limited if we want to learn from high-dimensional topological features ...
Ryuuichirou Hayakawa*
semanticscholar   +1 more source

Topological data analysis of zebrafish patterns [PDF]

open access: yesProceedings of the National Academy of Sciences, 2020
Self-organized pattern behavior is ubiquitous throughout nature, from fish schooling to collective cell dynamics during organism development. Qualitatively these patterns display impressive consistency, yet variability inevitably exists within pattern-forming systems on both microscopic and macroscopic scales.
Melissa R. McGuirl   +2 more
openaire   +4 more sources

Separating Topological Noise from Features Using Persistent Entropy [PDF]

open access: yes, 2016
Topology is the branch of mathematics that studies shapes and maps among them. From the algebraic definition of topology a new set of algorithms have been derived.
Atienza Martínez, María Nieves   +2 more
core   +1 more source

Topological Data Analysis for Speech Processing [PDF]

open access: yesInterspeech, 2022
We apply topological data analysis (TDA) to speech classification problems and to the introspection of a pretrained speech model, HuBERT. To this end, we introduce a number of topological and algebraic features derived from Transformer attention maps and
Eduard Tulchinskii   +7 more
semanticscholar   +1 more source

Prediction of cybersickness in virtual environments using topological data analysis and machine learning

open access: yesFrontiers in Virtual Reality, 2022
Recent significant progress in Virtual Reality (VR) applications and environments raised several challenges. They proved to have side effects on specific users, thus reducing the usability of the VR technology in some critical domains, such as flight and
Azadeh Hadadi   +5 more
semanticscholar   +1 more source

An analysis modality for vascular structures combining tissue-clearing technology and topological data analysis

open access: yesNature Communications, 2022
The blood and lymphatic vasculature networks are not yet fully understood even in mouse because of the inherent limitations of imaging systems and quantification methods.
Kei Takahashi   +12 more
semanticscholar   +1 more source

Topological data analysis of biological aggregation models. [PDF]

open access: yesPLoS ONE, 2015
We apply tools from topological data analysis to two mathematical models inspired by biological aggregations such as bird flocks, fish schools, and insect swarms.
Chad M Topaz   +2 more
doaj   +1 more source

Embeddings of low-dimensional strange attractors: Topological invariants and degrees of freedom [PDF]

open access: yes, 2007
When a low dimensional chaotic attractor is embedded in a three dimensional space its topological properties are embedding-dependent. We show that there are just three topological properties that depend on the embedding: parity, global torsion, and knot ...
Gilmore, Robert   +2 more
core   +1 more source

Persistence codebooks for topological data analysis [PDF]

open access: yesArtificial Intelligence Review, 2020
AbstractPersistent homology is a rigorous mathematical theory that provides a robust descriptor of data in the form of persistence diagrams (PDs) which are 2D multisets of points. Their variable size makes them, however, difficult to combine with typical machine learning workflows.
Bartosz Zieliński   +4 more
openaire   +3 more sources

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