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Analysis of the Plant Mitochondrial Transcriptome
2021Transcriptome analyses are widely performed, but the analysis of organelle genome expression is often overlooked. In this chapter, we describe three methods to analyse the accumulation, splicing, editing and processing of plant mitochondrial transcript expression: a classical RT-qPCR assay, an RNA-Seq approach with its bioinformatical and statistical ...
Baudry, Kévin +2 more
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Transcriptome analysis reveals the relationship between Spring viremia of carp N protein induced Endoplasmic reticulum stress in EPC cells and apoptosis and ...
Dinesh Velayutham +4 more
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Dinesh Velayutham +4 more
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Analysis of the wheat endosperm transcriptome
Journal of Applied Genetics, 2006Among the cereals, wheat is the most widely grown geographically and is part of the staple diet in much of the world. Understanding how the cereal endosperm develops and functions will help generate better tools to manipulate grain qualities important to end-users. We used a genomics approach to identify and characterize genes that are expressed in the
Debbie L, Laudencia-Chingcuanco +4 more
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Transcriptome analysis in heart failure
Current Opinion in Cardiology, 2016Genome-wide analysis of RNA abundances (transcriptome analysis) offers great potential to identify biomarkers of disease and to gain insight into mechanisms underlying the development of heart failure. I will discuss key factors in generating and evaluating transcriptome data, and recent studies that have contributed to the understanding of cardiac ...
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Large-Scale Transcriptome Analysis
2017Genomic variants identified to be linked with complex traits such as blood pressure are fewer in coding sequences compared to noncoding sequences. This being the case, there is an increasing need to query the expression of genes at a genome scale to then correlate the cause of alteration in expression to the function of variants regardless of where ...
David, Weaver +2 more
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Generation and Analysis of Transcriptomics Data
2010Transcript profiling ("Transcriptomics") is a widely used technique that obtains information on the abundance of multiple mRNA transcripts within a biological sample simultaneously. Therefore, when a number of such samples are analysed, as in a scientific experiment, large and complex data sets are gene-rated.
Philip D, Glaves, Jonathan D, Tugwood
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2013
Transcriptome coexpression analysis is an excellent tool for predicting the physiological functions of genes. It is based on the "guilt-by-association" principle. Generally, genes involved in certain metabolic processes are coordinately regulated. In other words, coexpressed genes tend to be involved in common or closely related biological processes ...
Keiko, Yonekura-Sakakibara +1 more
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Transcriptome coexpression analysis is an excellent tool for predicting the physiological functions of genes. It is based on the "guilt-by-association" principle. Generally, genes involved in certain metabolic processes are coordinately regulated. In other words, coexpressed genes tend to be involved in common or closely related biological processes ...
Keiko, Yonekura-Sakakibara +1 more
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Transcriptome Assembly and Alternative Splicing Analysis
2014Alternative Splicing (AS) is the molecular phenomenon whereby multiple transcripts are produced from the same gene locus. As a consequence, it is responsible for the expansion of eukaryotic transcriptomes. Aberrant AS is involved in the onset and progression of several human diseases.
BONIZZONI, PAOLA +5 more
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Analysis of human transcriptomes
Nature Genetics, 1999Victor E Velculescu +33 more
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