Results 1 to 10 of about 102,438 (334)

TE-Seq: a transposable element annotation and RNA-Seq pipeline [PDF]

Mobile DNA
Background The recognition that transposable elements (TEs) play important roles in many biological processes has elicited growing interest in analyzing sequencing data derived from this ‘dark genome’.
Maxfield M. G. Kelsey, Radha L. Kalekar, John M. Sedivy   +2 more
doaj   +4 more sources

SoyTEdb: a comprehensive database of transposable elements in the soybean genome [PDF]

BMC Genomics, 2010
Background Transposable elements are the most abundant components of all characterized genomes of higher eukaryotes. It has been documented that these elements not only contribute to the shaping and reshaping of their host genomes, but also play ...
Zhu Liucun, Nelson Rex T, Tian Zhixi, Grant David, Du Jianchang, Shoemaker Randy C, Ma Jianxin   +6 more
doaj   +5 more sources

Rosa1, a Transposable Element-Like Insertion, Produces Red Petal Coloration in Rose Through Altering RcMYB114 Transcription [PDF]

Frontiers in Plant Science, 2022
Rose (Rosa sp.) flowers have a rich diversity of colors resulting from the differential accumulation of anthocyanins, flavonols, and carotenoids. However, the genetic and molecular determinants of the red-petal trait in roses remains poorly understood ...
Maofu Li, Maofu Li, Maofu Li, Hui Zhang, Hui Zhang, Yuan Yang, Yuan Yang, Yuan Yang, Hua Wang, Hua Wang, Hua Wang, Zhen Xue, Zhen Xue, Youwei Fan, Youwei Fan, Youwei Fan, Pei Sun, Pei Sun, Pei Sun, Hong Zhang, Hong Zhang, Hong Zhang, Xinzhu Zhang, Xinzhu Zhang, Xinzhu Zhang, Wanmei Jin, Wanmei Jin, Wanmei Jin   +27 more
doaj   +2 more sources

Inference of transposable element ancestry. [PDF]

PLoS Genetics, 2014
Most common methods for inferring transposable element (TE) evolutionary relationships are based on dividing TEs into subfamilies using shared diagnostic nucleotides.
Aaron C Wacholder, Corey Cox, Thomas J Meyer, Robert P Ruggiero, Vijetha Vemulapalli, Annette Damert, Lucia Carbone, David D Pollock   +7 more
doaj   +3 more sources

A single-cell transposable element atlas of human cell identity [PDF]

Cell Reports: Methods
Summary: Single-cell RNA sequencing (scRNA-seq) is revolutionizing the study of complex biological systems. However, most sequencing studies overlook the contribution of transposable element (TE) expression to the transcriptome.
Helena Reyes-Gopar, Jez L. Marston, Bhavya Singh, Matthew Greenig, Jonah Lin, Mario A. Ostrowski, Kipchoge N. Randall, Jr, Santiago Sandoval-Motta, Nicholas Dopkins, Elsa Lawrence, Morgan M. O’Mara, Tongyi Fei, Rodrigo R.R. Duarte, Timothy R. Powell, Enrique Hernández-Lemus, Luis P. Iñiguez, Douglas F. Nixon, Matthew L. Bendall   +17 more
doaj   +2 more sources

ATRX loss in sarcomas is associated with dysregulated gene and transposable element expression, loss of DNA methylation, and worse survival. [PDF]

ESMO Rare Cancers
Demanelis K, Leix J, Burgess MA, Nacev BA.   +3 more
europepmc   +3 more sources

Transposable elements

Current Biology, 2022
Transposable elements are known by many names, including 'transposons', 'interspersed repeats', 'selfish genetic elements', 'jumping genes', and 'parasitic DNA', but here we will refer to them simply as transposable elements. Many biologists will have heard of transposable elements and their ability to transpose (change position) within the genome. But
Hayward, Alexandre, Gilbert, Clement
  +6 more sources

Transposable element activity captures human pluripotent cell states [PDF]

EMBO Reports
Human pluripotent stem cells (hPSCs) exist in multiple, transcriptionally distinct states and serve as powerful models for studying human development. Despite their significance, the molecular determinants and pathways governing these pluripotent states ...
Florencia Levin-Ferreyra, Srikanth Kodali, Yingzhi Cui, Alison R S Pashos, Patrizia Pessina, Justin Brumbaugh, Bruno Di Stefano   +6 more
doaj   +2 more sources

Transposable element landscapes in aging Drosophila.

PLoS Genetics, 2022
Genetic mechanisms that repress transposable elements (TEs) in young animals decline during aging, as reflected by increased TE expression in aged animals. Does increased TE expression during aging lead to more genomic TE copies in older animals?
Nachen Yang, Satyam P Srivastav, Reazur Rahman, Qicheng Ma, Gargi Dayama, Sizheng Li, Madoka Chinen, Elissa P Lei, Michael Rosbash, Nelson C Lau   +9 more
doaj   +3 more sources

The Dfam community resource of transposable element families, sequence models, and genome annotations

Mobile DNA, 2021
Dfam is an open access database of repetitive DNA families, sequence models, and genome annotations. The 3.0–3.3 releases of Dfam ( https://dfam.org ) represent an evolution from a proof-of-principle collection of transposable element families in model ...
Jessica Storer, Robert Hubley, Jeb Rosen, Travis J. Wheeler, Arian F. Smit   +4 more
doaj   +1 more source