Results 11 to 20 of about 2,250,508 (337)

Comprehensive identification of transposable element insertions using multiple sequencing technologies

Nature Communications, 2021
Transposable elements (TEs) help shape the structure and function of the human genome. When inserted into some locations, TEs may disrupt gene regulation and cause diseases.
Chong Chu, Rebeca Borges-Monroy, Vinayak V. Viswanadham, Soohyun Lee, Heng Li, E. Lee, P. Park   +6 more
semanticscholar   +1 more source

Whole genome resequencing reveals natural target site preferences of transposable elements in Drosophila melanogaster. [PDF]

PLoS ONE, 2012
Transposable elements are mobile DNA sequences that integrate into host genomes using diverse mechanisms with varying degrees of target site specificity.
Raquel S Linheiro, Casey M Bergman
doaj   +1 more source

Identifying transposable element expression dynamics and heterogeneity during development at the single-cell level with a processing pipeline scTE

Nature Communications, 2021
Transposable elements (TEs) make up a majority of a typical eukaryote’s genome, and contribute to cell heterogeneity in unclear ways. Single-cell sequencing technologies are powerful tools to explore cells, however analysis is typically gene-centric and ...
Jiangping He, I. A. Babarinde, Li Sun, Shuyang Xu, Ruhai Chen, Junjie Shi, Yuanjie Wei, Yuhao Li, Gang Ma, Zhuang Qiang, A. Hutchins, Jiekai Chen   +11 more
semanticscholar   +1 more source

RepeatModeler2 for automated genomic discovery of transposable element families

Proceedings of the National Academy of Sciences of the United States of America, 2020
Significance Genome sequences are being produced for more and more eukaryotic species. The bulk of these genomes are composed of parasitic, self-mobilizing transposable elements (TEs) that play important roles in organismal evolution.
Jullien M. Flynn, R. Hubley, Clément Goubert, Jeb Rosen, A. Clark, C. Feschotte, A. Smit   +6 more
semanticscholar   +1 more source

TnCentral: a Prokaryotic Transposable Element Database and Web Portal for Transposon Analysis

bioRxiv, 2021
The ability of bacteria to undergo rapid evolution and adapt to changing environmental circumstances drives the public health crisis of multiple antibiotic resistance, as well as outbreaks of disease in economically important agricultural crops and ...
K. Ross, A. Varani, E. Snesrud, Hongzhan Huang, D. O. Alvarenga, Jian Zhang, Cathy H. Wu, P. McGann, M. Chandler   +8 more
semanticscholar   +1 more source

Rosa1, a Transposable Element-Like Insertion, Produces Red Petal Coloration in Rose Through Altering RcMYB114 Transcription

Frontiers in Plant Science, 2022
Rose (Rosa sp.) flowers have a rich diversity of colors resulting from the differential accumulation of anthocyanins, flavonols, and carotenoids. However, the genetic and molecular determinants of the red-petal trait in roses remains poorly understood ...
Maofu Li, Maofu Li, Maofu Li, Hui Zhang, Hui Zhang, Yuan Yang, Yuan Yang, Yuan Yang, Hua Wang, Hua Wang, Hua Wang, Zhen Xue, Zhen Xue, Youwei Fan, Youwei Fan, Youwei Fan, Pei Sun, Pei Sun, Pei Sun, Hong Zhang, Hong Zhang, Hong Zhang, Xinzhu Zhang, Xinzhu Zhang, Xinzhu Zhang, Wanmei Jin, Wanmei Jin, Wanmei Jin   +27 more
doaj   +1 more source

Genomic impact of stress-induced transposable element mobility in Arabidopsis

Nucleic Acids Research, 2021
Transposable elements (TEs) have long been known to be major contributors to plant evolution, adaptation and crop domestication. Stress-induced TE mobilization is of particular interest because it may result in novel gene regulatory pathways responding ...
D. Roquis, Marta Robertson, Li’ang Yu, Michael Thieme, M. Julkowska, E. Bucher   +5 more
semanticscholar   +1 more source

Transposable element invasions [PDF]

Mobile Genetic Elements, 2013
Transposable elements have an ongoing, largely parasitic interaction with their hosts. We are interested in the timescale of this interaction. In a recent publication, we have examined the sequence divergence between class II DNA transposons from mammalian genomes.
Elizabeth Hellen, John F. Y. Brookfield
openaire   +3 more sources

The CCCTC-binding factor (CTCF) of Drosophila contributes to the regulation of the ribosomal DNA and nucleolar stability. [PDF]

PLoS ONE, 2011
In the repeat array of ribosomal DNA (rDNA), only about half of the genes are actively transcribed while the others are silenced. In arthropods, transposable elements interrupt a subset of genes, often inactivating transcription of those genes. Little is
Paola A Guerrero, Keith A Maggert
doaj   +1 more source

Combined analysis of transposable elements and structural variation in maize genomes reveals genome contraction outpaces expansion.

PLoS Genetics, 2023
Structural differences between genomes are a major source of genetic variation that contributes to phenotypic differences. Transposable elements, mobile genetic sequences capable of increasing their copy number and propagating themselves within genomes ...
Manisha Munasinghe, Andrew Read, Michelle C Stitzer, Baoxing Song, Claire C Menard, Kristy Yubo Ma, Yaniv Brandvain, Candice N Hirsch, Nathan Springer   +8 more
doaj   +1 more source