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Tree contractions and evolutionary trees [PDF]
SIAM Journal on Computing, 1997 An evolutionary tree is a rooted tree where each internal vertex has at least two children and where the leaves are labeled with distinct symbols representing species. Evolutionary trees are useful for modeling the evolutionary history of species. An agreement subtree of two evolutionary trees is an evolutionary tree which is also a topological subtree
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MicroorganismsAlpine meadows on the Qinghai–Tibetan Plateau are experiencing rapid degradation due to climate change and anthropogenic disturbances, leading to severe ecological consequences.
Bingzhang Li +5 more
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Trees within trees II: Nested fragmentations [PDF]
Annales de l'Institut Henri Poincaré, Probabilités et Statistiques, 2020 Similarly as in (Blancas et al. 2018) where nested coalescent processes are studied, we generalize the definition of partition-valued homogeneous Markov fragmentation processes to the setting of nested partitions, i.e. pairs of partitions $( , )$ where $ $ is finer than $ $.
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Zootaxa, 2014 Are birds dinosaurs? Answers to this question yield various responses, depending on a particular viewpoint. From the perspective of a common understanding of recent theories of the origin of birds and their potential precursor (ancestral) animals, then, yes, birds are a kind of dinosaur, having evolved from one or another non-avian dinosaur (Bostwick ...
Ebach, Malte C., Williams, DM
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Mapping the evolution of mitochondrial complex I through structural variation
FEBS Letters, EarlyView.Respiratory complex I (CI) is crucial for bioenergetic metabolism in many prokaryotes and eukaryotes. It is composed of a conserved set of core subunits and additional accessory subunits that vary depending on the organism. Here, we categorize CI subunits from available structures to map the evolution of CI across eukaryotes. Respiratory complex I (CI)
Dong‐Woo Shin +2 more
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Molecular bases of circadian magnesium rhythms across eukaryotes
FEBS Letters, EarlyView.Circadian rhythms in intracellular [Mg2+] exist across eukaryotic kingdoms. Central roles for Mg2+ in metabolism suggest that Mg2+ rhythms could regulate daily cellular energy and metabolism. In this Perspective paper, we propose that ancestral prokaryotic transport proteins could be responsible for mediating Mg2+ rhythms and posit a feedback model ...
Helen K. Feord, Gerben van Ooijen
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High-throughput sequencing-based assembly of chloroplast genomes of five pine tree species
Mitochondrial DNA. Part B. Resources, 2020 Pinus plants are the largest existing group of gymnosperms and one of the most highly differentiated taxa. Due to its huge ecological, economic, and scientific value, the genetic diversity and the relationship between the intraspecific evolution of Pinus
Qunfeng Luo +5 more
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Unimodular trees versus Einstein trees
The European Physical Journal C, 2016 20 pages, 5 ...
Álvarez, Enrique +2 more
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Disordered but rhythmic—the role of intrinsic protein disorder in eukaryotic circadian timing
FEBS Letters, EarlyView.Unstructured domains known as intrinsically disordered regions (IDRs) are present in nearly every part of the eukaryotic core circadian oscillator. IDRs enable many diverse inter‐ and intramolecular interactions that support clock function. IDR conformations are highly tunable by post‐translational modifications and environmental conditions, which ...
Emery T. Usher, Jacqueline F. Pelham
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Pathogens, 2023 Fungi from Pseudofusicoccum (Phyllostictaceae, Botryosphaeriales) have been reported as pathogens, endophytes, or saprophytes from various woody plants in different countries.
Guoqing Li +4 more
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