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Metagenomic identification of viral pathogens
Trends in Biotechnology, 2013The target-independent identification of viral pathogens using 'shotgun' metagenomic sequencing is an emerging approach with potentially wide applications in clinical diagnostics, public health monitoring, and viral discovery. In this approach, all viral nucleic acids present in a sample are sequenced in a random, shotgun manner.
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Exploring the viral world through metagenomics
Current Opinion in Virology, 2011Viral metagenomics, or shotgun sequencing of purified viral particles, has revolutionized the field of environmental virology by allowing the exploration of viral communities in a variety of sample types throughout the biosphere. The introduction of viral metagenomics has demonstrated that dominant viruses in environmental communities are not well ...
Rosario, Karyna, Breitbart, Mya
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Freshwater Viral Metagenome Analyses Targeting dsDNA Viruses
2023Viral metagenomics is one of the most widely used approaches to study viral population genomics. With the recent development of bioinformatic tools, the number of molecular biological methods, programs, and software to analyze viral metagenome data have greatly increased. Here, we describe the basic analysis workflow along with bioinformatic tools that
Kira, Moon, Jang-Cheon, Cho
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Diversity Analysis in Viral Metagenomes
2018Viruses are the most abundant and diverse biological entity in the earth. Nowadays, there are several viral metagenomes from different ecological niches which have been used to characterize new viral particles and to determine their diversity. However, viral metagenomic data have the disadvantage to be high-dimensional compositional and sparse.
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Viral Metagenomics – Generation of Viral Metagenome
2020T.C.K. Sugitha +3 more
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Metagenomics for surveillance of respiratory pathogens
Nature Reviews Microbiology, 2021Victoria R Carr, Chrispin Chaguza
exaly