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A whole genome simulator of prokaryote genome evolution

Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine, 2011
With the increase of the number of available prokaryotic genomes, studies focusing on the higher level evolutionary events, including the evolution of whole genomes, are now possible. Simulated datasets are essential components in both the development and evaluation stages for all evolutionary studies.
Kuan Yang, João Carlos Setubal
openaire   +2 more sources

WHOLE GENOME IDENTITY-BY-DESCENT DETERMINATION

Journal of Bioinformatics and Computational Biology, 2013
High-throughput single nucleotide polymorphism genotyping assays conveniently produce genotype data for genome-wide genetic linkage and association studies. For pedigree datasets, the unphased genotype data is used to infer the haplotypes for individuals, according to Mendelian inheritance rules.
Hadi Sabaa   +5 more
openaire   +6 more sources

The Role of Whole Genome and Whole Exome Sequencing in Preventive Genomic Sequencing Programs

The American Journal of Bioethics, 2015
The target article by Lazaro-Munoz and colleagues (2015) proposes policy recommendations on opt-in/opt-out strategies for the development of population-based preventive genomic sequencing programs ...
Gabrielle, Bertier   +2 more
openaire   +2 more sources

Whole-genome re-sequencing

Current Opinion in Genetics & Development, 2006
DNA sequencing can be used to gain important information on genes, genetic variation and gene function for biological and medical studies. The growing collection of publicly available reference genome sequences will underpin a new era of whole genome re-sequencing, but sequencing costs need to fall and throughput needs to rise by several orders of ...
openaire   +2 more sources

Whole-Genome Sequencing in Pharmacogenetics

Pharmacogenomics, 2013
on clinical disease prediction, and remarking on the problem of ‘missing heritability’ of risk for common diseases unaccounted for by common variants [1], the arena of pharmacogenetics was often singled out as an exception [2]. GWAS of drug response traits are quite exceptional in having provided a number of clinically significant genetic predictors of
openaire   +2 more sources

Whole-genome doubling in tissues and tumors

Trends in Genetics, 2023
Neil Ganem   +2 more
exaly  

Predicting Pseudomonas aeruginosa susceptibility phenotypes from whole genome sequence resistome analysis

Clinical Microbiology and Infection, 2021
José A Oteo   +2 more
exaly  

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