Results 21 to 30 of about 607,594 (307)

A Distributed Whole Genome Sequencing Benchmark Study

Frontiers in Genetics, 2020
Population sequencing often requires collaboration across a distributed network of sequencing centers for the timely processing of thousands of samples.
Richard D. Corbett, Robert Eveleigh, Joe Whitney, Namrata Barai, Mathieu Bourgey, Eric Chuah, Joanne Johnson, Richard A. Moore, Neda Moradin, Karen L. Mungall, Sergio Pereira, Miriam S. Reuter, Bhooma Thiruvahindrapuram, Richard F. Wintle, Jiannis Ragoussis, Lisa J. Strug, Jo-Anne Herbrick, Naveed Aziz, Steven J. M. Jones, Mark Lathrop, Stephen W. Scherer, Alfredo Staffa, Andrew J. Mungall   +22 more
doaj   +1 more source

Occurrence and temporal distribution of extended-spectrum β-lactamase-producing Escherichia coli in clams from the Central Adriatic, Italy

Frontiers in Microbiology, 2023
The spread of extended-spectrum β-lactamase (ESBL)-producing Escherichia coli is a major public health issue. Bivalves are filter-feeder animals capable of bioaccumulating the microorganisms present in water.
Francesca Leoni, Luca Sacchini, Silvia Pieralisi, Gabriele Angelico, Chiara Francesca Magistrali, Lucilla Cucco, Francesca Romana Massacci, Elisa Albini, Anna Duranti, Cesare Cammà, Barbara Secondini, Antonio Rinaldi, Francesca Barchiesi   +12 more
doaj   +1 more source

Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle [PDF]

, 2015
Background Domestication of the now-extinct wild aurochs, Bos primigenius, gave rise to the two major domestic extant cattle taxa, B. taurus and B. indicus.
Magee, DA, Murphy, A., Lohan, AJ, Braud, Martin, Rue-Albrecht, K, Edwards, C.J., Schroeder, Steven, Park, S.D.E., Teasdale, Matthew D., McGettigan, Paul A., Mark, Donoghue, Braud, M, Murphy, Alison, Chamberlain, AT, Bradley, D.G., Chamberlain, Andrew, Liu, Yuan, McGettigan, PA, Lohan, A.J., Spillane, C, Magee, David A., Sonstegard, Tad S., Tai, S, Liu, Y, MacHugh, DE, Murphy, A, School of Earth and Environmental Sciences, Schroeder, S, Tai, Shuaishuai, Bradley, Daniel G., Spillane, Charles, Donaghue, M.T., Park, SD, Braud, M., Loftus, Brendan J., Park, Stephen D E, Chamberlain, Andrew T., Loftus, BJ, MacHugh, David E., Park, Stephen D. E., Bradley, DG, Donoghue, Mark T., Lohan, Amanda J., Teasdale, M.D., Liu, Y., McGettigan, P.A., Teasdale, MD, Magee, D.A., Sonstegard, TS, Donoghue, MT, Edwards, CJ, University of Dublin Trinity College, Rue-Albrecht, Kévin, Chamberlain, A.T., Edwards, Ceiridwen J.   +54 more
core   +1 more source

Genomic data of an environmental Escherichia coli isolate shows high resemblance to E. coli K-12 reference strain MG1655

Data in Brief, 2021
Escherichia coli species exhibits a high genomic diversification from evolution, mobile genetic elements and recombination. An environmental E. coli isolate, ‘JHI_5025’ from a crop trial appeared to be clonally related to the historical reference isolate
Nicola Holden
doaj   +1 more source

Application of massive parallel sequencing to whole genome SNP discovery in the porcine genome [PDF]

, 2009
Background Although the Illumina 1 G Genome Analyzer generates billions of base pairs of sequence data, challenges arise in sequence selection due to the varying sequence quality.
Kerstens Hindrik HD, Heuven, H.C.M., Johan T den Dunnen, Henri CM Heuven, Andreia J Amaral, den Dunnen Johan T, Dibbits Bert, Groenen Martien AM, Heuven Henri CM, Megens, H.J.W.C., Amaral Andreia J, Megens Hendrik-Jan, Bert Dibbits, Martien AM Groenen, Groenen, M.A.M., Hendrik-Jan Megens, Dibbits, B.W., Dungen, J., den, Kerstens, H.H.D., Hindrik HD Kerstens, Richard PMA Crooijmans, Crooijmans, R.P.M.A., den Dungen, J., Crooijmans Richard PMA, Amaral, A.J.   +24 more
core   +1 more source

Future of whole genome sequencing [PDF]

Journal of Paediatrics and Child Health, 2014
The era of genomic medicine, anticipated since the completion of the Human Genome Project in 2003, is now upon us. Before long, genomic information will be an integral part of the medical record, and paediatricians will be able to interrogate these data for a range of purposes: to make a diagnosis in a sick child, to diagnose or exclude a rare genetic ...
openaire   +2 more sources

The South Asian Genome [PDF]

, 2014
The genetic sequence variation of people from the Indian subcontinent who comprise one-quarter of the world's population, is not well described. We carried out whole genome sequencing of 168 South Asians, along with whole-exome sequencing of 147 South ...
Li Yingrui, Afaq, S, Elliott Paul, Aitman, Timothy J., Scott, WR, Jun Wang (5906), Vandrovcova, Jana, Gaulton, KJ, McCarthy, Mark I, Gaulton Kyle J., Northwood Korrinne, Turro, Ernest, Frank Geoghegan, Sehmi Joban, Elliott, Paul, Frank Geoghegan (614027), Saima Afaq (614013), Afzal, Uzma, Scott, William R, Chambers John C., Northwood, K, Jun Wang, Jagvir Grewal, Grewal Jagvir, Kooner, Jaspal, Alexandra M Lewin, Afzal, U, Jaspal S. Kooner (163553), Butcher, S, Al-hussaini, Abtehale, Mills Rebecca, Wang, J, Afaq, Saima, Chambers, John, Lewin, Alexandra M, Chambers, John C, Vandrovcova Jana, Zhang, W, Korrinne Northwood (614026), Rebecca Mills (614022), Gaulton, Kyle J., Gurpreet S. Wander (163534), Laticia Oozageer (614019), James Abbott, Timothy J Aitman, Mark I. McCarthy (145748), Oozageer, L, Uzma Afzal, Sarah Butcher, Yingrui Li (149030), Joban Sehmi (245407), Kooner, IK, Mccarthy, Mark I., Sehmi, Joban, Al-Hussaini Abtehale, Weihua Zhang, Kooner Jaspal S., Loh, Marie, Lavery Anita, Saima Afaq, Jana Vandrovcova, William R Scott, Vasileios Panoulas, Grewal, Jagvir, Wass, MN, Alexandra M. Lewin (614025), Turro Ernest, Chambers, JC, Lavery, A, James Scott (40922), Uzma Afzal (614012), Turro, E, Lewin, AM, Grewal, J, McCarthy, MI, Weihua Zhang (44940), Ernest Turro (85076), McCarthy Mark I., Scott, James, Lehne, B, Sian-Tsung Tan, Jaspal S Kooner, Afaq Saima, Tan Sian-Tsung, Jana Vandrovcova (90909), Wang Jun, Laticia Oozageer, Pearson, Richard D, Richard D. Pearson (614015), Wander Gurpreet S., Gurpreet S Wander, Tan, ST, Abtehale Al-Hussaini (614021), Marie Loh, Ishminder K. Kooner (614020), Wang, Jun, Butcher, Sarah, Pearson, RD, Ishminder K Kooner, Abbott, J, Kyle J. Gaulton (277252), Kooner Ishminder K., Benjamin Lehne (215790), Li, Y, Aitman, TJ, Li, X, Anita Lavery, Lavery, Anita, Lewin Alexandra M., Abbott, James, William R. Scott (391938), Pearson Richard D., Vasileios Panoulas (614024), Kooner, Jaspal S, Jagvir Grewal (614023), Oozageer, Laticia, Lewin, Alexandra M., Miller Kathryn, Xinzhong Li, Aitman Timothy J., Sarah Butcher (204203), Northwood, Korrinne, Miller, Kathryn, Wass, Mark N, Lehne Benjamin, Scott, J, Abbott, James; id_orcid, Lehne, Benjamin, Kathryn Miller (614018), Sian-Tsung Tan (614011), Kooner, Ishminder K, James Abbott (614010), Panoulas Vasileios, Li Xinzhong, Richard D Pearson, Kyle J Gaulton, Elliott, P, Geoghegan Frank, Paul Elliott, Panoulas, Vasileios, Wander, Gurpreet S, Al-Hussaini, A, O'Reilly, P, Aitman, Timothy J, Li, Yingrui, James Scott, Kooner, Jaspal S., Abbott James, Wass Mark N., Kooner, JS, Vandrovcova, J, Marie Loh (6467), O'reilly, Paul, Oozageer Laticia, Chambers, John C., Ernest Turro, Panoulas, V, Wass, Mark N., Zhang Weihua, Yingrui Li, Scott, William R., Scott William R., Loh Marie, O'Reilly Paul, Korrinne Northwood, Rebecca Mills, John C Chambers, Tan, Sian-tsung, Zhang, Weihua, Paul O'Reilly (614014), Butcher Sarah, Sehmi, J, Paul O'Reilly, Mark N. Wass (614017), Li, Xinzhong, Mark I McCarthy, Mills, Rebecca, Tan, S-T, Paul Elliott (27295), Afzal Uzma, Benjamin Lehne, Wander, Gurpreet S., Abtehale Al-Hussaini, Mills, R, Zhi, Degui, Timothy J. Aitman (250706), Wander, GS, Pearson, Richard D., Loh, M, John C. Chambers (163544), Anita Lavery (614016), Scott James, Geoghegan, F, Mark N Wass, Gaulton, Kyle J, Miller, K, Xinzhong Li (430872), Kathryn Miller, Kooner, Ishminder K., Geoghegan, Frank, Joban Sehmi   +200 more
core   +1 more source

Whole genome sequencing analysis of Plasmodium vivax using whole genome capture

BMC Genomics, 2012
Background Malaria caused by Plasmodium vivax is an experimentally neglected severe disease with a substantial burden on human health. Because of technical limitations, little is known about the biology of this important human pathogen.
Bright A, Tewhey Ryan, Abeles Shira, Chuquiyauri Raul, Llanos-Cuentas Alejandro, Ferreira Marcelo U, Schork Nicholas J, Vinetz Joseph M, Winzeler Elizabeth A   +8 more
doaj   +1 more source

KvarQ: targeted and direct variant calling from fastq reads of bacterial genomes [PDF]

, 2014
High-throughput DNA sequencing produces vast amounts of data, with millions of short reads that usually have to be mapped to a reference genome or newly assembled.
Steiner, Andreas, Sebastien Gagneux, David Stucki, Andreas Steiner, Borrell, Sonia, Stucki, David, Sonia Borrell, Gagneux, Sebastien, Mireia Coscolla, Coscolla, Mireia   +9 more
core   +1 more source

Salmonella Serotyping Using Whole Genome Sequencing

Frontiers in Microbiology, 2018
Until recently, traditional serology and the Kauffmann White Scheme (KWS) have been the gold standard for Salmonella serotyping. Whole Genome Sequencing (WGS) has now emerged as an alternative in this field.
George M. Ibrahim, Paul M. Morin
doaj   +1 more source