Results 121 to 130 of about 823,231 (362)

common-workflow-language/cwltool: 3.1.20230526180938

, 2023
What's Changed CWLProv snapshots: capture the workflow even if the cwl:tool trick in the input object is used by @mr-c in https://github.com/common-workflow-language/cwltool/pull/1847 Refactoring provenance.py as provenance submodule by @RenskeW in ...
Thomas Hickman, Kapil kumar, Brad Chapman, Miguel Boland, Farah Zaib Khan, Tomoya Tanjo, Denis Yuen, Rupert Nash, Bruno P. Kinoshita, Andrey Kartashov, Gijs Molenaar, Manvendra Singh, Guillermo Carrasco, bogdang989, Michael Kotliar, Dan Leehr, Stian Soiland-Reyes, Hervé Ménager, John Chilton, Michael R. Crusoe, boysha, Kevin Hannon, ash, Peter Amstutz, Pau Ruiz Safont, Nebojsa Tijanic, Joshua C. Randall, Chuck McCallum, James J Porter   +28 more
core   +1 more source

Liquid biopsy‐based diagnostic evaluation of hypermethylated CpG sites for ovarian cancer diagnosis

Molecular Oncology, EarlyView.
This schematic outlines the workflow from biomarker identification to duplex MethyLight assay validation for epithelial ovarian cancer diagnosis using cfDNA‐based liquid biopsy. Initial screening of hypermethylated CpG candidates (cg02957270, cg10061138 cg00480298, COL2A1) was performed in tissue using ARMS‐PCR, COBRA, qPCR and image analysis. Selected
Deepa Bisht, Sameer Gupta, Amrita Chaurasia, Manisha Sachan   +3 more
wiley   +1 more source

A Hybrid Semi-Automated Workflow for Systematic and Literature Review Processes with Large Language Model Analysis

Future Internet
Systematic reviews (SRs) are a rigorous method for synthesizing empirical evidence to answer specific research questions. However, they are labor-intensive because of their collaborative nature, strict protocols, and typically large number of documents ...
Anjia Ye, Ananda Maiti, Matthew Schmidt, Scott J. Pedersen   +3 more
doaj   +1 more source

Bioinformatic Workflows for Generating Complete Plastid Genome Sequences—An Example from Cabomba (Cabombaceae) in the Context of the Phylogenomic Analysis of the Water-Lily Clade

Life, 2018
The sequencing and comparison of plastid genomes are becoming a standard method in plant genomics, and many researchers are using this approach to infer plant phylogenetic relationships.
Michael Gruenstaeudl, Nico Gerschler, Thomas Borsch   +2 more
doaj   +1 more source

Product Based Workflow Support: Dynamic Workflow Execution [PDF]

, 2008
Product Based Workflow Design (PBWD) is a successful new approach to workflow process support. A description of the product, the Product Data Model (PDM), is central to this approach. While other research so far has focused on deriving a process model from the PDM, this paper presents a way to directly execute the PDM.
Irene Vanderfeesten, Hajo A. Reijers, Wil M. P. van der Aalst   +2 more
openaire   +1 more source

Hiperflow: integração do protocolo de atendimento de pacientes potencialmente hipertensos em um sistema gerenciador de workflow [PDF]

, 2003
Dissertação (mestrado) - Universidade Federal de Santa Catarina, Centro Tecnológico. Programa de Pós-Graduação em Ciência da Computação.Neste trabalho foi desenvolvido um sistema computacional para o auxílio médico no tratamento e diagnose da hipertensão
Sehn, Michel
core  

common-workflow-language/cwltool: 3.1.20220623174452

, 2022
What's Changed Prevent the default value from being used when values were already passed by @kinow in https://github.com/common-workflow-language/cwltool/pull/1675 Expressiontool timer by @douglowe in https://github.com/common-workflow-language/cwltool ...
Thomas Hickman, Kapil kumar, Brad Chapman, Miguel Boland, Farah Zaib Khan, Tomoya Tanjo, Denis Yuen, Rupert Nash, Andrey Kartashov, Gijs Molenaar, Manvendra Singh, Guillermo Carrasco, Alejandro Barrera, bogdang989, Michael Kotliar, Dan Leehr, Stian Soiland-Reyes, Hervé Ménager, John Chilton, Michael R. Crusoe, boysha, Kevin Hannon, ash, Peter Amstutz, Nebojsa Tijanic, Joshua C. Randall, Pau Ruiz Safont, Chuck McCallum, James J Porter   +28 more
core   +1 more source

Patient therapy outcome modeling in cancer organoids is improved by cancer‐associated fibroblasts and organoid assembly convolution

Molecular Oncology, EarlyView.
Patient‐derived organoids (PDOs) from pancreatic, colorectal, and gastric cancers were used to evaluate standard and experimental therapies. Incorporating cancer‐associated fibroblasts (CAFs) into organoid cultures improved patient therapy outcome prediction.
Marcin Grochowski, Liudmyla Dolinchuk, Michał Jerzak, Albert Gandurski, Tomasz Grochowski, Weronika Wojtyś, Maciej Zadrożny, Wojciech Kaźmierczak, Małgorzata Lenarcik, Marta Matejak‐Górska, Radosław Samsel, Tomasz Olesiński, Dawid Walerych   +12 more
wiley   +1 more source

Loss of proton‐sensing TDAG8 increases tumor progression in mouse models of colon cancer

Molecular Oncology, EarlyView.
Loss of the pH‐sensing receptor TDAG8 accelerates colorectal cancer progression in mice. Animals lacking TDAG8 expression had increased tumor growth, DNA damage, and recruitment of tumor‐associated immune cells, including macrophages, neutrophils, and monocytes.
Ermanno Malagola, Yasmine Illi, Anna Bircher, Marijn Wilmink, Rachele F. Malagutti, Solenn Ottié, Cordelia Schuler, Pedro A. Ruiz, Cheryl de Vallière, Klaus Seuwen, Gerhard Rogler, Martin Hausmann   +11 more
wiley   +1 more source

ERROR HANDLING IN INTEGRATION WORKFLOWS

Научный вестник МГТУ ГА, 2017
Simulation experiments performed while solving multidisciplinary engineering and scientific problems require joint usage of multiple software tools.
A. M. Nazarenko, A. A. Prokhorov
doaj