Results 21 to 30 of about 1,268 (102)

Endocrine, Metabolic, and Skeletal Muscle Proteomic Responses During Energy Deficit With Concomitant Aerobic Exercise in Humans

The FASEB Journal, Volume 39, Issue 21, 15 November 2025.
After consecutive 5‐day periods of energy balance and energy deficit (ED, 78% reduced energy availability—EA) including aerobic exercise, trained males experienced reduced fat and fat‐free mass, alongside hormonal and metabolic adaptations favoring energy preservation and greater fat oxidation at rest and during exercise, without changes in resting ...
Yusuke Nishimura, Carl Langan‐Evans, Harry L. Taylor, Wee L. Foo, James P. Morton, Sam Shepherd, Juliette A. Strauss, Jatin G. Burniston, José L. Areta   +8 more
wiley   +1 more source

Ecological and Mutation‐Order Speciation in Senecio

Molecular Ecology, Volume 34, Issue 22, November 2025.
ABSTRACT Natural selection shapes how new species arise, yet the mechanisms that generate reproductive barriers remain actively debated. Although ecological divergence in contrasting environments and mutation‐order processes in similar environments are often viewed as distinct speciation mechanisms, we show they can occur simultaneously and act as part
Maddie E. James, Maria C. Melo, Federico Roda, Diana Bernal‐Franco, Melanie J. Wilkinson, Gregory M. Walter, Huanle Liu, Jan Engelstädter, Daniel Ortiz‐Barrientos   +8 more
wiley   +1 more source

Modeling and Analyzing Urban Networks and Amenities With OSMnx

Geographical Analysis, Volume 57, Issue 4, Page 567-577, October 2025.
ABSTRACT OSMnx is a Python package for downloading, modeling, analyzing, and visualizing urban networks and any other geospatial features from OpenStreetMap data. A large and growing body of literature uses it to conduct scientific studies across the disciplines of geography, urban planning, transport engineering, computer science, and others.
Geoff Boeing
wiley   +1 more source

BattINFO Converter: An Automated Tool for Semantic Annotation of Battery Cell Metadata

Batteries &Supercaps, Volume 8, Issue 9, September 2025.
Semantic annotation of research data and metadata plays a key role in enhancing their findability, accessability, interoperatability, and reuseability in line with the FAIR data principles. To promote and facilitate the widespread adoption of semantic annotations based on the BattINFO ontology within the battery research community, we developed ...
Nukorn Plainpan, Simon Clark, Corsin Battaglia   +2 more
wiley   +1 more source

Creating an Interactive Web Interface for Networks Stored in Knowledge Graph Databases

Current Protocols, Volume 5, Issue 9, September 2025.
Abstract Knowledge graphs (KG) are an emerging approach to organize biomedical research data by abstracting knowledge into networks that connect genes, diseases, pathogens, drugs, metabolites, cell types, pathways, patients, researchers, and other related concepts.
John Erol Evangelista, Andrew D. Lutsky, Anna I. Byrd, Daniel J. B. Clarke, Abinanda Prabhakaran, Sherry L. Jenkins, Avi Ma'ayan   +6 more
wiley   +1 more source

FastUKB: A Revolutionary Tool for Simplifying UK Biobank Data Analysis

iMetaMed, Volume 1, Issue 1, September 2025.
FastUKB revolutionizes UK Biobank (UKB) data extraction through an integrated R package system with a user interface, featuring automated metadata processing, versatile selection modes, and custom file upload capabilities. Unlike traditional methods that rely on complex manual SQL/R coding, FastUKB's direct UKB‐Research Analysis Platform connection ...
Xiaohong Ke, Kailai Li, Anqi Lin, Yue Qian, Peng Luo   +4 more
wiley   +1 more source

Automating Data Extraction From Scientific Literature and General PDF Files Using Large Language Models and KNIME: An Application in Toxicology

WIREs Computational Molecular Science, Volume 15, Issue 5, September/October 2025.
This study presents an innovative automated KNIME workflow that integrates document parsing tools and large language models (LLMs) to streamline the extraction of key data from publications. Demonstrating high accuracy, the method enhances data processing efficiency and access, thereby supporting advancements in toxicological research and beyond ...
José Teófilo Moreira‐Filho, Dhruv Ranganath, Ricardo S. Tieghi, Robert Patton, Vicki Sutherland, Charles Schmitt, Andrew A. Rooney, Jennifer Fostel, Vickie R. Walker, Trey Saddler, David Reif, Kamel Mansouri, Nicole Kleinstreuer   +12 more
wiley   +1 more source

Measuring catalytic mechanism similarity – a new approach to study enzyme function and evolution

The FEBS Journal, Volume 292, Issue 16, Page 4200-4210, August 2025.
We introduce a previously undescribed computational method to measure the similarity of enzyme mechanisms, enabling comparison of catalytic steps across hundreds of enzymes. Applying this method to a database of enzyme mechanisms demonstrated its ability to automatically uncover functional and evolutionary relationships, independently of sequence and ...
Antonio J. M. Ribeiro, Ioannis G. Riziotis, Neera Borkakoti, Pedro A. Fernandes, Maria J. Ramos, Janet M. Thornton   +5 more
wiley   +1 more source

ADAPT‐marketplace – A web‐application for XML‐based template sharing in radiation oncology

Journal of Applied Clinical Medical Physics, Volume 26, Issue 7, July 2025.
Abstract Purpose The adaption of radiotherapy (RT) plans in response to anatomical and physiological changes during treatment marks a significant shift toward personalized cancer care. However, the complexity of Online Adaptive Radiotherapy (OART) procedures often leads to variability in treatment quality across institutions.
Dennis N. Stanley, Joseph Harms, Gaurav N. Rathi, Joel A. Pogue, Ritish Nedunoori, John B. Fiveash, Richard A Popple, Carlos E. Cardenas   +7 more
wiley   +1 more source

MOTHER-DB: A Database for Sharing Nonhuman Ovarian Histology Images. [PDF]

IEEE/ACM Trans Comput Biol Bioinform
Dietrich SW, Ma W, Ding Y, Watanabe KH, Zelinski MB, Sluka JP.   +5 more
europepmc   +1 more source