Results 21 to 30 of about 38,521 (297)

13C based proteinogenic amino acid (PAA) and metabolic flux ratio analysis of Lactococcus lactis reveals changes in pentose phosphate (PP) pathway in response to agitation and temperature related stresses.

PeerJ, 2017
Lactococcus lactis subsp. cremoris MG1363 is an important starter culture for dairy fermentation. During industrial fermentations, L. lactis is constantly exposed to stresses that affect the growth and performance of the bacterium. Although the response of L.
Azizan, K., Ressom, H., Mendoza, E., Baharum, S.   +3 more
openaire   +5 more sources

Investigating the potential interactions between energy metabolism and recombinant protein production in Pichia pastoris by 13C-based metabolic flux analysis

New Biotechnology, 2009
Jordà, J., Jouhten, Paula, Maaheimo, Hannu, Ferrer, P., Albiol, J.   +5 more
openaire   +3 more sources

13CFLUX - third-generation high-performance engine for isotopically (non)stationary 13C metabolic flux analysis. [PDF]

Bioinformatics
Summary 13C-based metabolic flux analysis is a cornerstone of quantitative systems biology, yet its increasing data complexity and methodological diversity place high demands on simulation software. We introduce 13CFLUX(v3), a third-generation simulation
Stratmann A, Beyß M, Jadebeck JF, Wiechert W, Nöh K.   +4 more
europepmc   +2 more sources

A Method to Constrain Genome-Scale Models with 13C Labeling Data. [PDF]

PLoS Computational Biology, 2015
Current limitations in quantitatively predicting biological behavior hinder our efforts to engineer biological systems to produce biofuels and other desired chemicals.
Héctor García Martín, Vinay Satish Kumar, Daniel Weaver, Amit Ghosh, Victor Chubukov, Aindrila Mukhopadhyay, Adam Arkin, Jay D Keasling   +7 more
doaj   +1 more source

Characterization of growth and metabolism of the haloalkaliphile Natronomonas pharaonis [PDF]

, 2010
Natronomonas pharaonis is an archaeon adapted to two extreme conditions: high salt concentration and alkaline pH. It has become one of the model organisms for the study of extremophilic life.
A Varma, AM Feist, AM Feist, B Teusink, BJ Tindall, C Francke, CH Schilling, CM Gomes, D Desmarais, D Oesterhelt, Dieter Oesterhelt, Eduardo Mendoza, F Pfeiffer, Friedhelm Pfeiffer, G Soliman, H Ma, I Schomburg, I Schomburg, J Edwards, J Edwards, J Edwards, JL Reed, LL Grochowski, Locedie Mansueto, M Covert, M Covert, M Falb, M Falb, M Kanehisa, N Price, Nathan D. Price, O Gonzalez, O Gonzalez, Orland Gonzalez, R Hartmann, R Ramakrishna, R Schuetz, R White, Ralf Zimmer, S Schuster, SJ Beard, Tanja Oberwinkler, U Sauer   +42 more
core   +7 more sources

SUMOFLUX: A Generalized Method for Targeted 13C Metabolic Flux Ratio Analysis. [PDF]

PLoS Computational Biology, 2016
Metabolic fluxes are a cornerstone of cellular physiology that emerge from a complex interplay of enzymes, carriers, and nutrients. The experimental assessment of in vivo intracellular fluxes using stable isotopic tracers is essential if we are to ...
Maria Kogadeeva, Nicola Zamboni
doaj   +1 more source

13CO2-labelling and Sampling in Algae for Flux Analysis of Photosynthetic and Central Carbon Metabolism

Bio-Protocol, 2023
The flux in photosynthesis can be studied by performing 13CO2 pulse labelling and analysing the temporal labelling kinetics of metabolic intermediates using gas or liquid chromatography linked to mass spectrometry.
Or Geffen, David Achaintre, Haim Treves
doaj   +1 more source

The Entner-Doudoroff and Nonoxidative Pentose Phosphate Pathways Bypass Glycolysis and the Oxidative Pentose Phosphate Pathway in Ralstonia solanacearum

mSystems, 2020
In Ralstonia solanacearum, a devastating phytopathogen whose metabolism is poorly understood, we observed that the Entner-Doudoroff (ED) pathway and nonoxidative pentose phosphate pathway (non-OxPPP) bypass glycolysis and OxPPP under glucose oxidation ...
Poonam Jyoti, Manu Shree, Chandrakant Joshi, Tulika Prakash, Suvendra Kumar Ray, Siddhartha Sankar Satapathy, Shyam Kumar Masakapalli   +6 more
doaj   +1 more source

13C-assisted metabolic flux analysis to investigate heterotrophic and mixotrophic metabolism in Cupriavidus necator H16 [PDF]

, 2018
Introduction. Cupriavidus necator H16 is a gram-negative bacterium, capable of lithoautotrophic growth by utilizing hydrogen as an energy source and fixing carbon dioxide (CO2) through Calvin-Benson-Bassham (CBB) cycle. The potential to utilize synthesis
A Pohlmann, A Steinbüchel, B Bowien, B Christensen, C Wittmann, CG Friedrich, CH Poskar, CJ Brigham, E Schwartz, E Schwartz, E Wilde, HG Schlegel, HG Schlegel, JD Young, JL Ienczak, JM Park, K Peplinski, K Walsh, K-H Tang, L Stryer, LE Quek, M Lopar, M Raberg, M Weitzel, MR Antoniewicz, N Bruland, N Tanadchangsaeng, N Zamboni, N Zamboni, Naglis Malys, Nigel P. Minton, P Millard, R Shimizu, R Shimizu, S Alagesan, Swathi Alagesan, T Fukui, W Wiechert, W Wiechert, X Feng   +39 more
core   +2 more sources

Peer Review #1 of "13C based proteinogenic amino acid (PAA) and metabolic flux ratio analysis of Lactococcus lactis reveals changes in pentose phosphate (PP) pathway in response to agitation and temperature related stresses (v0.1)"

, 2017
Lactococcus lactis subsp.cremoris MG1363 is an important starter culture for dairy fermentation.During industrial fermentations, L. lactis is constantly exposed to stresses that affect the growth and performance of the bacterium.Although the response of L.
Kamalrul Azlan Azizan, Habtom W. Ressom, Eduardo Mendoza, Syarul Nataqain, Baharum Corresp, Syarul Nataqain Baharum   +5 more
  +7 more sources