CoFold: thermodynamic RNA structure prediction with a kinetic twist [PDF]
arXiv, 2012 Existing state-of-the-art methods that take a single RNA sequence and predict the corresponding RNA secondary-structure are thermodynamic methods. These predict the most stable RNA structure, but do not consider the process of structure formation. We have by now ample experimental and theoretical evidence, however, that sequences in vivo fold while ...
arxiv
The complete sequence of the mitochondrial genome of the Chinook salmon, Oncorhynchus tshawytscha
Biological Research, 2003 The complete sequence of the mitochondrial genome of Chinook salmon, Oncorhynchus tshawytscha, has been determined. The circular genome consisting of 16,644 base pairs encodes thirteen proteins, the 12S and 16S ribosomal RNAs, and 22 transfer RNAs. These
VIVIAN WILHELM +6 more
doaj
Electron microscopic determination of the binding sites of ribosomal proteins S4 and S8 on 16S RNA [PDF]
, 1978 openalex +1 more source
Specific selfpacking of the ribosomal 16 S RNA
FEBS Letters, 1978 Olga M. Selivanova +2 more
openaire +3 more sources
Detection of Nocardia by 16S Ribosomal RNA Gene PCR and Metagenomic Next-Generation Sequencing (mNGS). [PDF]
Front Cell Infect Microbiol, 2021 Ding J, Ma B, Wei X, Li Y.
europepmc +1 more source
Latent Diffusion Models for Controllable RNA Sequence Generation [PDF]
arXivThis work presents RNAdiffusion, a latent diffusion model for generating and optimizing discrete RNA sequences of variable lengths. RNA is a key intermediary between DNA and protein, exhibiting high sequence diversity and complex three-dimensional structures to support a wide range of functions.
arxiv
Primary and secondary structures of Escherichia coli MRE 600 23S ribosomal RNA. Comparison with models of secondary structure for maize chloroplast 23S rRNA and for large portions of mouse and human 16S mitochondrial rRNAs [PDF]
, 1981 Christiane Branlant +6 more
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Therapeutic intervention based on gene sequencing analysis of microbial 16S ribosomal RNA of the intrauterine microbiome improves pregnancy outcomes in IVF patients: a prospective cohort study. [PDF]
J Assist Reprod Genet, 2023 Iwami N +7 more
europepmc +1 more source
Revista Argentina de Microbiología, 2011 In this study, two halophilic bacterial strains isolated from saline habitats in Argentina grew in the presence of gas oil. They were identified as Halomonas spp. and Nesterenkonia sp. by 16S ribosomal RNA sequencing.
Sebastián D´Ippólito +2 more
doaj
Frontiers in Cellular and Infection MicrobiologyObjectiveCurrently, it has been reported that uterine microbiota affected pregnancy outcomes in assisted reproductive technology, but little was known in obese women.
Ying Yan +5 more
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