Results 11 to 20 of about 1,419 (154)

Structural Characteristics, Comparative Analyses, and Conservation Significance of the Complete Chloroplast Genome of the Critically Endangered <i>Lithocarpus yongfuensis</i> (Fagaceae). [PDF]

Ecol Evol
We assembled and annotated the complete chloroplast genome of L. yongfuensis. The genome structure, gene content, and phylogenetic relationships were analyzed, providing new insights into the species' evolutionary history. These findings offer valuable genomic resources for future studies on taxonomy, conservation, and molecular breeding of L ...
Gu F, Yang L.
europepmc   +2 more sources

Molecular phylogenetics of Phyllanthus sensu lato (Phyllanthaceae): Towards coherent monophyletic taxa [PDF]

, 2021
The genus Phyllanthus is paraphyletic as currently circumscribed, with the genera Breynia, Glochidion and Synostemon nested within it. A phylogeny based on nuclear (ITS, PHYC) and chloroplast (matK, accD-psaI, trnS-trnG) markers is presented, including ...
Bouman, RW, Bruhl, JJ, Kessler, PJA, Saunders, RMK, Strijk, JS, Telford, IRH, van Welzen, PC   +6 more
core   +4 more sources

Evolutionary dynamics of the chloroplast genome in Daphne (Thymelaeaceae): comparative analysis with related genera and insights into phylogenetics. [PDF]

FEBS Open Bio
Comparative analysis of chloroplast genomes from 14 genera of Thymelaeaceae revealed variation in gene content, ranging from 128 to 142 genes, primarily influenced by IR expansion/contraction events and pseudogenization of ndhF, ndhI, and ndhG. Two large inversions were detected within the large single‐copy region, including a synapomorphic inversion ...
Abdullah, Li H, Yan R, Chen C, Islam M, Majid A, Ahmed I, Heidari P, Tian X.   +8 more
europepmc   +2 more sources

The First Complete Chloroplast Genome of <i>Lycium shawii</i>: Genomic Architecture, Molecular Phylogenetics and Evolutionary Insights. [PDF]

Ecol Evol
The study presents the first complete chloroplast genome of Lycium shawii (PQ824997.1) spanning 155,936 bp and contains 128 genes (84 protein‐coding genes, 36 tRNAs, and eight rRNAs). Nucleotide diversity analysis highlighted atpI, rbcL, and accD as hypervariable loci suitable for DNA barcoding. Molecular dating analysis revealed that L.
Asiri MMA, Ali MA, Alwahibi MS, Ahmed SS, Rahman MO, Mahato R, Faisal M, Kim SY, Lee J.   +8 more
europepmc   +2 more sources

Characterization of <i>Verbesina encelioides</i> (Asteroideae, Asteraceae) Chloroplast Genome and Phylogenetic Insights. [PDF]

Ecol Evol
In this study, we report the first de novo assembled chloroplast genome of Verbesina encelioides, a member of the tribe Heliantheae within the subfamily Asteroideae of Asteraceae. ABSTRACT Verbesina encelioides (Cav.) Benth. & Hook.f. ex A.Gray (Asteroideae, Asteraceae) is a widespread annual herb native to southwestern North America that has ...
Yan R, Abdullah, Jia J, Islam M, Li H, Liu M, Yir-Erong B, Tian X.   +7 more
europepmc   +2 more sources

Genetic Structure and Population Demographic History of a Widespread Mangrove Plant Xylocarpus granatum J. Koenig across the Indo-West Pacific Region [PDF]

, 2017
Xylocarpus granatum J. Koenig is one of the most widespread core component species of mangrove forests in the Indo-West Pacific (IWP) region, and as such is suitable for examining how genetic structure is generated across spatiotemporal scales.
Adjie Bayu, Ardli Erwin, Asakawa Takeshi, Baba Shigeyuki, Kajita Tadashi, Kandasamy Kathiresan, Saleh Mohd, Salmo III Severino, Soe Khin, Suleiman Monica, Sungkaew Sarawood, Takayama Koji, Tomizawa Yuki, Tsuda Yoshiaki, Tung Nguyen, Watano Yasuyuki, Wee Alison, Yamamoto Takashi, Yllano Orlex, 津田 吉晃   +19 more
core   +6 more sources

The complete plastome sequences of five Aponogeton species (Aponogetonaceae): Insights into the structural organization and mutational hotspots

Plant Diversity, 2020
Members of the aquatic plant genus Aponogeton are widely used commercially in aquariums because of their variable leaf shape and unique inflorescences.
Virginia M. Mwanzia, Ding-Xuan He, Andrew W. Gichira, Yan Li, Boniface K. Ngarega, Mwihaki J. Karichu, Peris W. Kamau, Zhi-Zhong Li   +7 more
doaj   +1 more source

Highly variable chloroplast markers for evaluating plant phylogeny at low taxonomic levels and for DNA barcoding. [PDF]

PLoS ONE, 2012
BackgroundAt present, plant molecular systematics and DNA barcoding techniques rely heavily on the use of chloroplast gene sequences. Because of the relatively low evolutionary rates of chloroplast genes, there are very few choices suitable for molecular
Wenpan Dong, Jing Liu, Jing Yu, Ling Wang, Shiliang Zhou   +4 more
doaj   +1 more source

Comparative Chloroplast Genomics of Fritillaria (Liliaceae), Inferences for Phylogenetic Relationships between Fritillaria and Lilium and Plastome Evolution

Plants, 2020
Fritillaria is a genus that has important medicinal and horticultural values. The study involved the most comprehensive chloroplast genome samples referring to Old and New World clades of Fritillaria for marker selection and phylogenetic studies.
Jiao Huang, Yan Yu, Yan-Mei Liu, Deng-Feng Xie, Xing-Jin He, Song-Dong Zhou   +5 more
doaj   +1 more source

Complete chloroplast genomes of Asparagus aethiopicus L., A. densiflorus (Kunth) Jessop 'Myers', and A. cochinchinensis (Lour.) Merr.: Comparative and phylogenetic analysis with congenerics.

PLoS ONE, 2022
Asparagus species are widely used for medicinal, horticultural, and culinary purposes. Complete chloroplast DNA (cpDNA) genomes of three Asparagus specimens collected in Hong Kong-A. aethiopicus, A. densiflorus 'Myers', and A.
Kwan-Ho Wong, Bobby Lim-Ho Kong, Tin-Yan Siu, Hoi-Yan Wu, Grace Wing-Chiu But, Pang-Chui Shaw, David Tai-Wai Lau   +6 more
doaj   +2 more sources