Results 21 to 30 of about 131,326 (303)
STRONG: metagenomics strain resolution on assembly graphs [PDF]
Genome Biology, 2021 AbstractWe introduce STrain Resolution ON assembly Graphs (STRONG), which identifies strains de novo, from multiple metagenome samples. STRONG performs coassembly, and binning into metagenome assembled genomes (MAGs), and stores the coassembly graph prior to variant simplification.
Limasset, Antoine +9 more
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Splicing graphs and EST assembly problem [PDF]
Bioinformatics, 2002 Abstract Motivation: The traditional approach to annotate alternative splicing is to investigate every splicing variant of the gene in a case-by-case fashion. This approach, while useful, has some serious shortcomings. Recent studies indicate that alternative splicing is more frequent than previously thought and some genes may produce ...
Steffen Heber +4 more
openaire +2 more sources
Planning Assembly Sequence with Graph Transformer
2023 IEEE International Conference on Robotics and Automation (ICRA), 2023 Submitted to ...
Lin Ma 0002 +6 more
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A product data management integrated product configuration and assembly process planning environment. [PDF]
, 2002 This paper reports part of the results of a 3 year project carried out at Cranfield University in collaboration with companies in the automotive and aerospace industry, aiming to develop new methodologies for computer aided assembly process planning ...
Bowland, N. W., Gao, James X.
core +1 more source
Phylogenetic Comparative Assembly [PDF]
, 2009 Husemann P, Stoye J. Phylogenetic Comparative Assembly. Algorithms for Molecular Biology. 2010;5(1): 3.BACKGROUND:Recent high throughput sequencing technologies are capable of generating a huge amount of data for bacterial genome sequencing projects ...
Stoye Jens +5 more
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GraphVAMPnets for Uncovering Slow Collective Variables of Self-Assembly Dynamics [PDF]
, 2023 Uncovering slow collective variables (CVs) of self-assembly dynamics is important to elucidate its numerous kinetic assembly pathways and drive the design of novel structures for advanced materials through the bottom-up approach. However, identifying the
Xuhui, Huang +5 more
core +1 more source
Scientific Data, 2023 This study presents the first chromosome-level genome assembly of Hanwoo, an indigenous Korean breed of Bos taurus taurus. This is the first genome assembly of Asian taurus breed. Also, we constructed a pangenome graph of 14 B.
Jisung Jang +5 more
doaj +1 more source
Shotgun Assembly of Labeled Graphs
IEEE Transactions on Network Science and Engineering, 2019 Ver3: 23 pages, matches published version but with a corrected proof of Theorem 4.5 (result unchanged); Ver2: 22 pages; Ver1: 21 ...
Elchanan Mossel, Nathan Ross
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DNA Paired Fragment Assembly Using Graph Theory [PDF]
, 2017 DNA fragment assembly requirements have generated an important computational problem created by their structure and the volume of data. Therefore, it is important to develop algorithms able to produce high-quality information that use computer resources ...
J. Quiroz-Ibarra +2 more
core +1 more source
Detecting Superbubbles in Assembly Graphs [PDF]
, 2013 Peer-reviewed and presented as part of the 13th Workshop on Algorithms in Bioinformatics (WABI2013)
Taku Onodera +2 more
openaire +3 more sources