Results 41 to 50 of about 131,326 (303)

ALLPATHS: de novo assembly of whole-genome shotgun microreads [PDF]

, 2008
New DNA sequencing technologies deliver data at dramatically lower costs but demand new analytical methods to take full advantage of the very short reads that they produce.
Kleber, M, Nusbaum, C, MacCallum, I, Jaffe, DB, Lander, ES, Shlyakhter, IA, Belmonte, MK, Butler, J   +7 more
core   +1 more source

Graph Assembly for Spider and Tadpole Graphs [PDF]

, 2023
We consider the problem of determining the number of assembly trees for graphs, which is motivated by the biology problem of how protein shells of viruses self- assemble. The shell is modeled as a graph with vertices and edges.
Ling Gao
core   +1 more source

METAMVGL: a multi-view graph-based metagenomic contig binning algorithm by integrating assembly and paired-end graphs

BMC Bioinformatics, 2021
Background Due to the complexity of microbial communities, de novo assembly on next generation sequencing data is commonly unable to produce complete microbial genomes. Metagenome assembly binning becomes an essential step that could group the fragmented
Zhenmiao Zhang, Lu Zhang
doaj   +1 more source

Graph Theoretical Strategies in De Novo Assembly

IEEE Access, 2022
De novo genome assemblers assume the reference genome is unavailable, incomplete, highly fragmented, or significantly altered as in cancer tissues. Algorithms for de novo assembly have been developed to deal with and assemble a large number of short ...
Kimia Behizadi, Nafiseh Jafarzadeh, Ali Iranmanesh   +2 more
doaj   +1 more source

ARGContextProfiler: extracting and scoring the genomic contexts of antibiotic resistance genes using assembly graphs

Frontiers in Microbiology
Antibiotic resistance (AR) presents a global health challenge, necessitating an improved understanding of the ecology, evolution, and dissemination of antibiotic resistance genes (ARGs).
Nazifa Ahmed Moumi, Shafayat Ahmed, Connor Brown, Amy Pruden, Liqing Zhang   +4 more
doaj   +1 more source

On the Complexity of Graph Self-assembly in Accretive Systems [PDF]

Natural Computing, 2006
zbMATH Open Web Interface contents unavailable due to conflicting licenses.
Stanislav Angelov, Sanjeev Khanna, Mirkó Visontai   +2 more
openaire   +1 more source

A fast algorithm for the construction of universal footprinting templates in DNA [PDF]

, 2005
We introduce and give a complete description of a new graph to be used for DNA sequencing questions. This graph has the advantage over the classical de Bruijn graph that it fully accounts for the double stranded nature of DNA, rather than dealing with ...
James W. Anderson, Fox, Keith R., Graham A. Niblo, Anderson, James W., Keith R. Fox, Niblo, Graham A.   +5 more
core   +1 more source

Generating An Automated Assembly Graph On The Basis Of The 3D-Geometry Of A Product Assembly Group

Proceedings of the Conference on Production Systems and Logistics
In an era of globalisation and worldwide competition, it is essential for companies to develop competitive and cost-effective products. To achieve this goal, early selection between different product concepts is crucial. Despite proven methods in product
Disselkamp, Jan-Philipp, Lick, Jonas, Azem, Ghayth, Grothe, Robin, Ptock, Lukas, Meyer, Matthias, Kürpick, Dominik, Hovemann, Aschot, Dumitrescu, Roman, Herberger, David, Hübner, Marco   +10 more
doaj   +1 more source

STEP- Based Assembly Feature Recognition Using Attribute Adjacency Graph for Prismatic Parts [PDF]

Engineering and Technology Journal, 2013
This paper introduces the concept of STEP AP203(STandard for Exchange of Product model data) an ISO standard as a neutral format for exchange of CAD model data between different CAD/CAM systems, and how STEP AP 203 data is stored and how the feature ...
Hussein Salem Ketan, Aseel Jameel Haleel
doaj   +1 more source

DNA recombination through assembly graphs

Discrete Applied Mathematics, 2009
zbMATH Open Web Interface contents unavailable due to conflicting licenses.
Angela Angeleska, Natasa Jonoska, Masahico Saito   +2 more
openaire   +2 more sources