Results 221 to 230 of about 160,303 (300)

metaTraits: a large-scale integration of microbial phenotypic trait information. [PDF]

Nucleic Acids Res
Podlesny D, Kim CY, Robbani SM, Schudoma C, Fullam A, Reimer LC, Koblitz J, Schober I, Iyappan A, Van Rossum T, Schiller J, Grekova A, Kuhn M, Bork P.   +13 more
europepmc   +1 more source

NaMeco - Nanopore full-length 16S rRNA gene reads clustering and annotation. [PDF]

BMC Genomics
Yergaliyev T, Rios-Galicia B, Camarinha-Silva A.   +2 more
europepmc   +1 more source

Constructing a "periodic table" of bacteria to map diversity in trait space. [PDF]

ISME J
Hoffert M, Gorman E, Lladser ME, Fierer N.   +3 more
europepmc   +1 more source

Changes to virus taxonomy, the international code of virus classification and nomenclature, and the ICTV statutes ratified by the International Committee on Taxonomy of Viruses (2025). [PDF]

Arch Virol
Simmonds P, Adriaenssens EM, Lefkowitz EJ, Oksanen HM, Zerbini FM, Alfenas-Zerbini P, Aylward FO, Dempsey DM, Freitas-Astúa J, Hendrickson RC, Hughes HR, Krupovic M, Kuhn JH, Łobocka M, Mayne R, Mushegian AR, Penzes JJ, Reyes Muñoz A, Robertson DL, Roux S, Rubino L, Sabanadzovic S, Smith DB, Suzuki N, Turner D, Doorslaer KV, Varsani A.   +26 more
europepmc   +1 more source

Ginseng polysaccharides prevent mastitis through Lactobacillus murinus‐derived deoxycholic acid and TGR5 signaling

iMetaOmics, EarlyView.
Prebiotic Ginseng polysaccharides (GP) alleviate mastitis through selective enrichment of gut L. murinus, which elevates its anti‐inflammatory metabolite deoxycholic acid (DCA). Circulating DCA engages mammary epithelial TGR5 receptors, triggering the cAMP–PKA pathway to suppress NF‐κB/NLRP3‐mediated inflammation.
Zhijie Zheng, Huiying Liu, Sizhe Chen, Jianhui Gu, Sisi Cai, Xiang Liu, Raphaela I. Lau, Yao Zhang, Sunjae Lee, Xiaoyan Wang, Kewei Fan, Xiaole Yin, Hein Min Tun, Renyou Gan, Haichong Wu, Qi Su   +15 more
wiley   +1 more source

Functionally complementary bacterial inoculant coordinates arbuscular mycorrhizal fungi to improve Angelica sinensis root yield and quality

iMetaOmics, EarlyView.
Comprehensive understanding of how diverse PGPR strains enhance the rhizosphere microenvironment remains a considerable challenge. Here, we provide experimental evidence that a functionally synergistic composite microbial formulation can markedly enhance growth performance and improve the quality attributes in Angelica sinensis.
Zongyu Zhang, Yun Wang, Jiecai Zhao, Gaofeng Chen, Andéole Niyongabo Turatsinze, Liang Yue, Yuan Tian, Xiaofan Xie, Ailing Ye, Meilan Zhang, Lingling Wu, Zengxiang Guo, Yubao Zhang, Ruoyu Wang   +13 more
wiley   +1 more source

<i>Pseudomonas aeruginosa</i>, my model for research on quorum sensing, biofilms, and opportunistic infections. [PDF]

J Bacteriol
Greenberg EP.
europepmc   +1 more source

Accu16S/AccuITS: Accurate and broadly applicable amplicon sequencing for absolute microbiome quantification

iMeta, EarlyView.
Traditional 16S rRNA gene and Internal Transcribed Spacer region amplicon sequencing provides only relative abundance, often leading to biased ecological interpretations. To overcome this limitation, we developed Accu16S/AccuITS, an absolute quantification method for bacterial and fungal amplicons based on synthetic internal spike‐in DNA with known ...
Defeng Bai, Ou Fang, Caihua Li, Bin Cai, Xingyan Tan, Mengmeng Jiang, Bin Gan, Jinxia Fu, Yunyun Gao, Ying Wang, Yong‐Xin Liu   +10 more
wiley   +1 more source

Exploiting fuzzy weights in CNN model-based taxonomic classification of 500-bp sequence bacterial dataset. [PDF]

Sci Rep
Algarni AD, Abd El-Samie FE, Soliman NF, Emara HM, Algarni F, Abd-Alhalem SM, Marie HS.   +6 more
europepmc   +1 more source

Chondroitin sulfate restores muscle mass via gut–muscle axis remodeling through sugar–bile acid metabolism reprogramming

iMeta, EarlyView.
The graphical abstract illustrates the molecular mechanism by which chondroitin sulfate (DCS) alleviates glucocorticoid‐induced myopathy through the gut–muscle axis. DCS selectively enriches L. johnsonii Z‐RW, enhancing bshA‐encoded BSH activity to promote bile acid deconjugation and reduce the sugar–bile acid ratio, thereby re‐establishing intestinal ...
Ruiyun Wu, Tao Wen, Nan Shang, Penghao Xie, Zhenyu Wang, Hang Li, Shaobo Li, Dequan Zhang   +7 more
wiley   +1 more source