ECSFinder: optimized prediction of evolutionarily conserved RNA secondary structures from genome sequences. [PDF]
Gaonac'h-Lovejoy V+3 more
europepmc +1 more source
The IFNγ‐CIITA‐MHC II axis modulates melanoma cell susceptibility to NK‐cell‐mediated cytotoxicity
Natural killer (NK) cells play a central role in anti‐melanoma immunity. However, melanoma cells adapt during co‐culture by upregulating CIITA and MHC II in response to interferon gamma (IFNγ), thereby evading NK‐cell lysis. Blocking IFNγ signaling or treatment with dimethyl fumarate/simvastatin counteracts this immune escape and maintains NK‐cell ...
Lena C. M. Krause+6 more
wiley +1 more source
Genetic testing in epithelial ovarian cancer includes both germline and tumor‐testing. This approach often duplicates resources. The current prospective study assessed the feasibility of tumor‐first multigene testing by comparing tumor tissue with germline testing of peripheral blood using an 18‐gene NGS panel in 106 patients.
Elisabeth Spenard+12 more
wiley +1 more source
Predicting the DNA binding specificity of transcription factor mutants using family-level biophysically interpretable machine learning. [PDF]
Liu S+7 more
europepmc +1 more source
The Base Sequence Corresponding to DYZ1 is Detectable in the DNA from Many Animal Species.
Yohsuke Higashi+3 more
openalex +2 more sources
ERRFI1, a neural crest (NC)‐associated gene, was upregulated in melanoma and negatively correlated with the expression of melanocytic differentiation markers and the susceptibility of melanoma cells toward BRAF inhibitors (BRAFi). Knocking down ERRFI1 significantly increased the sensitivity of melanoma cells to BRAFi.
Nina Wang+8 more
wiley +1 more source
Nanopore-Aware Embedded Detection for Mobile DNA Sequencing: A Viterbi-HMM Design Versus Deep Learning Approaches. [PDF]
Hammad K+3 more
europepmc +1 more source
Survivin and Aurora Kinase A control cell fate decisions during mitosis
Aurora A interacts with survivin during mitosis and regulates its centromeric role. Loss of Aurora A activity mislocalises survivin, the CPC and BubR1, leading to disruption of the spindle checkpoint and triggering premature mitotic exit, which we refer to as ‘mitotic slippage’.
Hana Abdelkabir+2 more
wiley +1 more source
Fitness landscapes and thermodynamic approaches to development of nucleic acids enzymes: from classical methods to AI integration. [PDF]
Takahashi S+3 more
europepmc +1 more source