Results 41 to 50 of about 294,457 (253)

Analysing the significance of small conformational changes and low occupancy states in serial crystallographic data

open access: yesFEBS Open Bio, EarlyView.
This protocol paper outlines methods to establish the success of a time‐resolved serial crystallographic experiment, by means of statistical analysis of timepoint data in reciprocal space and models in real space. We show how to amplify the signal from excited states to visualise structural changes in successful experiments.
Jake Hill   +4 more
wiley   +1 more source

Molecular dynamics simulations of positively selected codons in FcγRI reveal novel biochemical binding properties

open access: yesFEBS Open Bio, EarlyView.
Evolutionary analysis across 32 placental mammals identified positive selection at residues H148 and W149 in the immune receptor FcγR1. Ancestral reconstruction combined with molecular dynamics simulations reveals how these mutations may influence receptor structure and dynamics, providing insight into the evolution of antibody recognition and immune ...
David A. Young   +7 more
wiley   +1 more source

Bayesian Proxy Modelling for Estimating Black Carbon Concentrations using White-Box and Black-Box Models

open access: yesApplied Sciences, 2019
Black carbon (BC) is an important component of particulate matter (PM) in urban environments. BC is typically emitted from gas and diesel engines, coal-fired power plants, and other sources that burn fossil fuel.
Martha A. Zaidan   +3 more
doaj   +1 more source

Independence and Bayesian updating methods [PDF]

open access: yesArtificial Intelligence, 1986
Appears in Proceedings of the First Conference on Uncertainty in Artificial Intelligence (UAI1985)
openaire   +4 more sources

Refinement of amino‐acid conformation vs. difference density maps in time‐resolved serial femtosecond crystallography data analysis

open access: yesFEBS Open Bio, EarlyView.
The dFoCC pipeline starts with observed DED and resting‐state coordinates, which are then used to generate a library of triggered states. Correlation analysis of the calculated DED features of each candidate vs observed DED permits quantitative evaluation of candidate structural quality.
Meng Iao Fong   +3 more
wiley   +1 more source

Evaluation of genome-enabled selection for bacterial cold water disease resistance using progeny performance data in rainbow trout: Insights on genotyping methods and genomic prediction models

open access: yesFrontiers in Genetics, 2016
Bacterial cold water disease (BCWD) causes significant economic losses in salmonid aquaculture, and traditional family-based breeding programs aimed at improving BCWD resistance have been limited to exploiting only between-family variation.
Roger L. Vallejo   +8 more
doaj   +1 more source

Directed evolution of enzymes at the crossroads of tradition and innovation

open access: yesFEBS Open Bio, EarlyView.
An iterative cycle of data‐driven enzyme optimization comprising four stages: genetic diversification of a template enzyme, expression of protein variants, high‐throughput evaluation, and machine‐learning‐guided redesign of the next variant library.
Maria Tomkova   +2 more
wiley   +1 more source

A Bayesian Approach to the Vertical Structure of the Disk of the Milky Way

open access: yesThe Open Journal of Astrophysics, 2020
This work investigates the vertical profile of the stars in the disk of the Milky Way. The models investigated are of the form sech2/n(nz/(2H)) where, setting α = 2/n, the three functions of the sequence α= 0, 1, 2 correspond to exponential, sech, and ...
Phillip S. Dobbie , Stephen J. Warren
doaj   +1 more source

Molecular characterization of covRS mutations in M1UK Streptococcus pyogenes

open access: yesFEBS Open Bio, EarlyView.
Group A Streptococcus (GAS) acquires covRS mutations driving a hypervirulent bacterial state, frequently associated with invasive disease‐like necrotizing fasciitis. We demonstrate that the newly emerged M1UK GAS lineage can also acquire these mutations.
Jarrad Pritchard   +12 more
wiley   +1 more source

Warming Trends and Long-Range Dependent Climate Variability Since Year 1900: A Bayesian Approach

open access: yesFrontiers in Earth Science, 2019
Temporal persistence in unforced climate variability makes detection of trends in surface temperature difficult. Part of the challenge is methodological since standard techniques assume a separation of time scales between trend and noise. In this work we
Eirik Myrvoll-Nilsen   +3 more
doaj   +1 more source

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