Unveiling Multi‐Scale Architectural Features in Single‐Cell Hi‐C Data Using scCAFE
scCAFE is a deep learning framework designed to identify multi‐scale 3D genome architectural features from single‐cell Hi‐C data without dense imputation. It predicts chromatin loops, TAD‐like domains, and A/B compartments, enabling efficient characterization of organization at the single‐cell level. scCAFE also identifies marker loop anchors, offering
Fuzhou Wang+12 more
wiley +1 more source
Pertinence of contact duration as edge feature for epidemic spread analysis. [PDF]
Shetty RD, Bhattacharjee S.
europepmc +1 more source
This work designs manganese metal‐organic frameworks (Mn‐MOFs) co‐assembled with Cas12a/crRNA, enabling rapid release of Mn2⁺ under mild conditions. The MOFs‐induced proximity effect sustains Mn2⁺‐Cas12a/crRNA interactions, enhancing the trans‐cleavage activity of complex available to develop an electrochemical biosensor based on Mn‐MOFs‐enhanced ...
Shuai Wu+8 more
wiley +1 more source
Best proximity points for semi-cyclic contraction pairs in regular cone metric spaces
M. Ahmadi Baseri, H. Mazaheri
openalex +2 more sources
Evidence supporting a catalytic pentad mechanism for the proteasome and other N-terminal nucleophile enzymes. [PDF]
Fung D+8 more
europepmc +1 more source
A galvanic replacement is used to control dual atomic metals (Au and Ir) on a covalent organic framework (COF) nanoparticle and then coated with hyaluronic acid (HA). Under a specific bimetallic ratio (COF/Aux/Ir1‐x), the optimization can be achieved for the conversion of intracellular nutrients into reactive species (HOCl and O2• ─) and effectively ...
Wei‐Chung Pan+9 more
wiley +1 more source
Graph-Based 3-Dimensional Spatial Gene Neighborhood Networks of Single Cells in Gels and Tissues. [PDF]
Fang Z+9 more
europepmc +1 more source
The State of High‐Resolution Imaging of the Human Inner Ear: A Look Into the Black Box
High‐resolution imaging of the cochlea is challenged by numerous unique aspects of this organ, where sensorineural cells, crucial for hearing, are too small for conventional modalities like magnetic resonance imaging and computed tomography. This article reviews current imaging techniques, emerging technologies, and innovations aimed at improving ...
Shelley Batts+3 more
wiley +1 more source
Machine Learning Prediction of Left Ventricular Assist Device Thrombosis from Acoustic Harmonic Power. [PDF]
Carlson KD+2 more
europepmc +1 more source
Particle‐Assisted Optoelectronic Tweezers for Manipulating Single Cells and Microparticles
This work introduces a particle‐assisted optoelectronic tweezers (OET) technique that uses Ag‐SiO2 microparticles as intermediaries to manipulate cells and microparticles via particle‐induced dielectrophoresis. The method extends the OET manipulation range while reducing cell damage.
Ao Wang+13 more
wiley +1 more source