Results 101 to 110 of about 2,499 (218)
The Biocurator: Connecting and Enhancing Scientific Data
PLoS Computational Biology, 2006 From Impressionism and Pop Art to phosphorylation sites and interacting atom pairs, the realm of curation has been expanded. The recent growth of bioinformatics, driven by exponentially growing data, advanced computing techniques, and increased funding from private and governmental organizations, has created the need for novel strategies to adequately ...Nima Salimi, Randi Vitaopenaire +4 more sourcesTowards BioDBcore: a community-defined information specification for biological databases [PDF]
, 2017 The present article proposes the adoption of a community-defined, uniform, generic description of the core attributes of biological databases, BioDBCore.Attwood, Teresa K., Bairoch, Amos, Bateman, Alex, Blake, Judith A., Bult, Carol J., Cherry, J. Michael, Chisholm, Rex L., Cochrane, Guy, Cook, Charles E., Eppig, Janan T., Field, Dawn, Galperin, Michael Y., Gaudet, Pascale, Gentleman, Robert, Goble, Carole A., Gojobori, Takashi, Hancock, John M., Howe, Douglas G., Imanishi, Tadashi, Kelso, Janet, Landsman, David, Lewis, Suzanna E., Mizrachi, Ilene Karsch, Orchard, Sandra, Ouellette, B. F. Francis, Ranganathan, Shoba, Richardson, Lorna, Rocca-Serra, Philippe, Sansone, Susanna-Assunta, Schofield, Paul N., Smedley, Damian, Southan, Christopher, Tan, Tin Wee, Tatusova, Tatiana, Taylor, Chris, Whetzel, Patricia L., White, Owen, Yamasaki, Chisato +37 morecore WikiPathways: building research communities on biological pathways. [PDF]
, 2011 Here, we describe the development of WikiPathways (http://www.wikipathways.org), a public wiki for pathway curation, since it was first published in 2008. New features are discussed, as well as developments in the community of contributors.Conklin, Bruce R, Evelo, Chris T, Hanspers, Kristina, Kelder, Thomas, Kutmon, Martina, Pico, Alexander R, van Iersel, Martijn P +6 morecore +2 more sourcesConference report: Biocuration 2021 Virtual Conference [PDF]
Database: The Journal of Biological Databases and Curation, 2022 Abstract The International Society for Biocuration (ISB) aims to promote the field of biocuration and provide a community forum for information exchange and networking. Over the past 14 years, the ISB has hosted annual international conferences, entirely dedicated to the field of biocuration, that rotate between regions across the world. Federica Quaglia, Rama Balakrishnan, Susan M Bello, Nicole Vasilevsky +3 moreeuropepmc +3 more sourcesQuantification and expert evaluation of evidence for chemopredictive biomarkers to personalize cancer treatment. [PDF]
, 2017 Predictive biomarkers have the potential to facilitate cancer precision medicine by guiding the optimal choice of therapies for patients. However, clinicians are faced with an enormous volume of often-contradictory evidence regarding the therapeutic ...Beckman, Robert A., Boca, Simina M., Brody, Jonathan R., Madhavan, Subha, Marshall, John L., Pishvaian, Michael J., Rao, Shruti, Riazi, Shahla, Yabar, Cinthya S. +8 morecore +1 more sourceSequencing and characterizing the genome of Estrella lausannensis as an undergraduate project: training students and biological insights. [PDF]
, 2015 With the widespread availability of high-throughput sequencing technologies, sequencing projects have become pervasive in the molecular life sciences.Alexander eGoesmann, Burkhard eLinke, Bérénice eChassot, Carlo eRivolta, Claire eBertelli, Claire eBertelli, Céline eTerrettaz, Gilbert eGreub, James eClulow, Jan Roelof eVan Der Meer, Keith eHarshman, Laurent eFalquet, Laurent eFalquet, Laurent eFarinelli, Marc eRobinson-Rechavi, Marc eRobinson-Rechavi, Olivier eHilfiker, Paola eBenaglio, Paolo eSchumacher, Ryo eMiyazaki, Samuel eRappo, Sébastien eAeby, Sébastien eRitzmann, Walid eGharib, Walid eGharib +24 morecore +3 more sourcesThe CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
Genome Biology, 2019 Background The Critical Assessment of Functional Annotation (CAFA) is an ongoing, global, community-driven effort to evaluate and improve the computational annotation of protein function. Results Here, we report on the results of the third CAFA challenge,Naihui Zhou, Yuxiang Jiang, Timothy R. Bergquist, Alexandra J. Lee, Balint Z. Kacsoh, Alex W. Crocker, Kimberley A. Lewis, George Georghiou, Huy N. Nguyen, Md Nafiz Hamid, Larry Davis, Tunca Dogan, Volkan Atalay, Ahmet S. Rifaioglu, Alperen Dalkıran, Rengul Cetin Atalay, Chengxin Zhang, Rebecca L. Hurto, Peter L. Freddolino, Yang Zhang, Prajwal Bhat, Fran Supek, José M. Fernández, Branislava Gemovic, Vladimir R. Perovic, Radoslav S. Davidović, Neven Sumonja, Nevena Veljkovic, Ehsaneddin Asgari, Mohammad R.K. Mofrad, Giuseppe Profiti, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Florian Boecker, Heiko Schoof, Indika Kahanda, Natalie Thurlby, Alice C. McHardy, Alexandre Renaux, Rabie Saidi, Julian Gough, Alex A. Freitas, Magdalena Antczak, Fabio Fabris, Mark N. Wass, Jie Hou, Jianlin Cheng, Zheng Wang, Alfonso E. Romero, Alberto Paccanaro, Haixuan Yang, Tatyana Goldberg, Chenguang Zhao, Liisa Holm, Petri Törönen, Alan J. Medlar, Elaine Zosa, Itamar Borukhov, Ilya Novikov, Angela Wilkins, Olivier Lichtarge, Po-Han Chi, Wei-Cheng Tseng, Michal Linial, Peter W. Rose, Christophe Dessimoz, Vedrana Vidulin, Saso Dzeroski, Ian Sillitoe, Sayoni Das, Jonathan Gill Lees, David T. Jones, Cen Wan, Domenico Cozzetto, Rui Fa, Mateo Torres, Alex Warwick Vesztrocy, Jose Manuel Rodriguez, Michael L. Tress, Marco Frasca, Marco Notaro, Giuliano Grossi, Alessandro Petrini, Matteo Re, Giorgio Valentini, Marco Mesiti, Daniel B. Roche, Jonas Reeb, David W. Ritchie, Sabeur Aridhi, Seyed Ziaeddin Alborzi, Marie-Dominique Devignes, Da Chen Emily Koo, Richard Bonneau, Vladimir Gligorijević, Meet Barot, Hai Fang, Stefano Toppo, Enrico Lavezzo, Marco Falda, Michele Berselli, Silvio C.E. Tosatto, Marco Carraro, Damiano Piovesan, Hafeez Ur Rehman, Qizhong Mao, Shanshan Zhang, Slobodan Vucetic, Gage S. Black, Dane Jo, Erica Suh, Jonathan B. Dayton, Dallas J. Larsen, Ashton R. Omdahl, Liam J. McGuffin, Danielle A. Brackenridge, Patricia C. Babbitt, Jeffrey M. Yunes, Paolo Fontana, Feng Zhang, Shanfeng Zhu, Ronghui You, Zihan Zhang, Suyang Dai, Shuwei Yao, Weidong Tian, Renzhi Cao, Caleb Chandler, Miguel Amezola, Devon Johnson, Jia-Ming Chang, Wen-Hung Liao, Yi-Wei Liu, Stefano Pascarelli, Yotam Frank, Robert Hoehndorf, Maxat Kulmanov, Imane Boudellioua, Gianfranco Politano, Stefano Di Carlo, Alfredo Benso, Kai Hakala, Filip Ginter, Farrokh Mehryary, Suwisa Kaewphan, Jari Björne, Hans Moen, Martti E.E. Tolvanen, Tapio Salakoski, Daisuke Kihara, Aashish Jain, Tomislav Šmuc, Adrian Altenhoff, Asa Ben-Hur, Burkhard Rost, Steven E. Brenner, Christine A. Orengo, Constance J. Jeffery, Giovanni Bosco, Deborah A. Hogan, Maria J. Martin, Claire O’Donovan, Sean D. Mooney, Casey S. Greene, Predrag Radivojac, Iddo Friedberg +166 moredoaj +1 more sourceOverview of the interactive task in BioCreative V [PDF]
, 2016 Fully automated text mining (TM) systems promote efficient literature searching, retrieval, and review but are not sufficient to produce ready-to-consume curated documents. These systems are not meant to replace biocurators, but instead to assist them in Van Auken, Kimberly, Wang, Qinghua, Wang, Xiaodong +2 morecore A quick guide for student-driven community genome annotation
, 2018 High quality gene models are necessary to expand the molecular and genetic
tools available for a target organism, but these are available for only a
handful of model organisms that have undergone extensive curation and
experimental validation over the ...Benoit, Joshua B., Brown, Susan J., D'elia, Tom, Flores, Mirella, Hosmani, Prashant S., Miller, Sherry, Mueller, Lukas A., Munoz-Torres, Monica, Saha, Surya, Shippy, Teresa, Wiersma-Koch, Helen +10 morecore +2 more sources
