Results 111 to 120 of about 2,351 (208)
OMICtools: a community-driven search engine for biological data analysis [PDF]
arXiv, 2017 With high-throughput biotechnologies generating unprecedented quantities of data, researchers are faced with the challenge of locating and comparing an exponentially growing number of programs and websites dedicated to computational biology, in order to maximize the potential of their data.
arxiv
One document, many users: what happens when you re-purpose a document? [PDF]
, 2013 To assess global challenges surrounding issues such as climate change and invasive species requires a baseline of historical data. We are fortunate in biodiversity that such data exists in a rich body of literature.
King, David, Lyal, Chris, Morse, David
core
Text mining for Swiss-Prot curation: A story of success and failure [PDF]
, 2009 A text mining group has been set up at the Swiss Institute of Bioinformatics, with objective to develop and adapt information retrieval and extraction tools to help Swiss-Prot curators in their daily annotation work.
Anne-Lise Veuthey +3 more
core +2 more sources
PepPSy: a web server to prioritize gene products in experimental and biocuration workflows [PDF]
Database, 2016 Among the 20 000 human gene products predicted from genome annotation, about 3000 still lack validation at protein level. We developed PepPSy, a user-friendly gene expression-based prioritization system, to help investigators to determine in which human tissues they should look for an unseen protein.
Sallou, Olivier +5 more
openaire +6 more sources
Genome Biology, 2019 Background The Critical Assessment of Functional Annotation (CAFA) is an ongoing, global, community-driven effort to evaluate and improve the computational annotation of protein function. Results Here, we report on the results of the third CAFA challenge,
Naihui Zhou +166 more
doaj +1 more source
LitGen: Genetic Literature Recommendation Guided by Human Explanations [PDF]
arXiv, 2019 As genetic sequencing costs decrease, the lack of clinical interpretation of variants has become the bottleneck in using genetics data. A major rate limiting step in clinical interpretation is the manual curation of evidence in the genetic literature by highly trained biocurators.
arxiv
BC4GO: a full-text corpus for the BioCreative IV GO task [PDF]
, 2014 Gene function curation via Gene Ontology (GO) annotation is a common task among Model Organism Database groups. Owing to its manual nature, this task is considered one of the bottlenecks in literature curation.
Arighi, Cecilia N. +14 more
core +1 more source
BMC Bioinformatics, 2018 Background For automated reading of scientific publications to extract useful information about molecular mechanisms it is critical that genes, proteins and other entities be correctly associated with uniform identifiers, a process known as named entity ...
John A. Bachman +2 more
doaj +1 more source
Journal of Medical Internet Research, 2020 BackgroundLicensed drugs may cause unexpected adverse reactions in patients, resulting in morbidity, risk of mortality, therapy disruptions, and prolonged hospital stays. Officially approved drug package inserts list the adverse reactions identified from
Li, Xiaoying +3 more
doaj +1 more source