Results 101 to 110 of about 620 (141)

Knowledge engineering tools for reasoning with scientific observations and interpretations: a neural connectivity use case

BMC Bioinformatics, 2011
Background We address the goal of curating observations from published experiments in a generalizable form; reasoning over these observations to generate interpretations and then querying this interpreted knowledge to supply the supporting evidence.
Bota Mihail, Hovy Eduard H, Ramakrishnan Cartic, Russ Thomas A, Burns Gully APC   +4 more
doaj   +1 more source

Textpresso Central: a customizable platform for searching, text mining, viewing, and curating biomedical literature

BMC Bioinformatics, 2018
Background The biomedical literature continues to grow at a rapid pace, making the challenge of knowledge retrieval and extraction ever greater. Tools that provide a means to search and mine the full text of literature thus represent an important way by ...
H.-M. Müller, K. M. Van Auken, Y. Li, P. W. Sternberg   +3 more
doaj   +1 more source

The future of biocuration [PDF]

Nature, 2008
Howe, D, Costanzo, M, Fey, P, Gojobori, T, Hannick, L, Hide, W, Hill, D P, Kania, R, Schaeffer, M, St, Pierre S, Twigger, S, White, O, Yon, Rhee S   +12 more
openaire   +2 more sources

Biocuration in the structure–function linkage database: the anatomy of a superfamily [PDF]

, 2017
With ever-increasing amounts of sequence data available in both the primary literature and sequence repositories, there is a bottleneck in annotating molecular function to a sequence. This article describes the biocuration process and methods used in the
David Mischel, Ferrin, Thomas E, Gemma L. Holliday, Mischel, David, Hicks, Michael A, Brown, Shoshana D, Akiva, Eyal, Pegg, Scott C-H, Elaine C. Meng, Thomas E. Ferrin, Scott C.-H. Pegg, John H. Morris, Patricia C. Babbitt, Babbitt, Patricia C, Meng, Elaine C, Michael A. Hicks, Shoshana D. Brown, Eyal Akiva, Holliday, Gemma L, Morris, John H, Huang, Conrad C, Conrad C. Huang   +21 more
core   +2 more sources

Improving biocuration of microRNAs in diseases: a case study in idiopathic pulmonary fibrosis [PDF]

, 2017
MicroRNAs (miRNAs) are small and non-coding RNA molecules that inhibit gene expression posttranscriptionally. They play important roles in several biological processes, and in recent years there has been an interest in studying how they are related to ...
Balderas-Martínez, Yalbi Itzel, Annie Pardo, Yalbi Itzel Balderas-Martínez, Hilda Solano-Lira, Julio Collado-Vides, Collado-Vides, Julio, Gabriela Contreras, Pardo, Annie, Solano-Lira, Hilda, Mishael Sánchez-Pérez, Contreras, Gabriela, Rinaldi, Fabio; https://orcid.org/, Fabio Rinaldi, Moisés Selman, Sánchez-Pérez, Mishael, Selman, Moisés   +15 more
core   +1 more source

Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI)

Journal of Biomedical Semantics
Background Ontologies are fundamental components of informatics infrastructure in domains such as biomedical, environmental, and food sciences, representing consensus knowledge in an accurate and computable form.
Sabrina Toro, Anna V. Anagnostopoulos, Susan M. Bello, Kai Blumberg, Rhiannon Cameron, Leigh Carmody, Alexander D. Diehl, Damion M. Dooley, William D. Duncan, Petra Fey, Pascale Gaudet, Nomi L. Harris, Marcin P. Joachimiak, Leila Kiani, Tiago Lubiana, Monica C. Munoz-Torres, Shawn O‘Neil, David Osumi-Sutherland, Aleix Puig-Barbe, Justin T. Reese, Leonore Reiser, Sofia MC. Robb, Troy Ruemping, James Seager, Eric Sid, Ray Stefancsik, Magalie Weber, Valerie Wood, Melissa A. Haendel, Christopher J. Mungall   +29 more
doaj   +1 more source

Annotometer: Encouraging annotation of published works

, 2017
It is clear that the amount of data being generated worldwide cannot be curated and annotated by any individual or small group. Even those generating the data only tend to curate it with information that is directly relevant to their interests/goals ...
Laurie, Goodman, Xiao, SiZhe, Scott, Edmunds, Chris, Hunter, Peter, Li   +4 more
core   +1 more source

Current issues in BioCuration 

, 2017
How much does professional curation cost? What is the accuracy of professional curation? Can we replace professional curators with text-mining software or with crowd-sourced curation?
openaire   +1 more source

IMGT^® Nomenclature of Immunoglobulins (IG) or Antibodies and T Cell Receptors (TR): A Common Language for Immunoinformatics and Artificial Intelligence (AI)

Antibodies
The immunoglobulins (IG) or antibodies and the T cell receptors (TR) are the antigen receptors of the adaptive immune responses (AIR) of jawed vertebrates (Gnathostomata).
Marie-Paule Lefranc, Gérard Lefranc
doaj   +1 more source

Working in biocuration: contemporary experiences and perspectives

Database
Abstract This perspective article synthesizes current knowledge regarding what is known regarding biocuration as a career and the challenges facing the field. It draws on existing literature and ongoing qualitative research to discuss the nature of biocuration, biocurators’ career trajectories, key challenges that biocurators face, and ...
openaire   +3 more sources